Results 61 - 80 of 508 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 3' | -54.9 | NC_005261.1 | + | 42160 | 0.66 | 0.918957 |
Target: 5'- cGCgaACGCCGgaaGCGAGCcguggacGCAggGCGCGa -3' miRNA: 3'- -CGgaUGCGGU---UGUUCG-------CGUagCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 4557 | 0.66 | 0.918957 |
Target: 5'- gGCCUugGCUGgauccGCGGGCGgGUCcggcgggGCGCc -3' miRNA: 3'- -CGGAugCGGU-----UGUUCGCgUAG-------CGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 95325 | 0.66 | 0.913655 |
Target: 5'- cCCUACGuCCGgguccagaacACGGGCGUGUcCGUGCu -3' miRNA: 3'- cGGAUGC-GGU----------UGUUCGCGUA-GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 90782 | 0.66 | 0.913655 |
Target: 5'- gGCCgcugcgGCgGCCGGCGcGCGCuaccgCGUGCGc -3' miRNA: 3'- -CGGa-----UG-CGGUUGUuCGCGua---GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 121784 | 0.66 | 0.913655 |
Target: 5'- gGCCgcgGCCGGCGGGCuggGCAgggggCGCGUg -3' miRNA: 3'- -CGGaugCGGUUGUUCG---CGUa----GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 79419 | 0.66 | 0.913655 |
Target: 5'- gGCCcgUGUCGGCGAGCuCggCGCGCGu -3' miRNA: 3'- -CGGauGCGGUUGUUCGcGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 71055 | 0.66 | 0.913655 |
Target: 5'- cGCCgUGgGCCAGCcgccGCGCggCGgGCGg -3' miRNA: 3'- -CGG-AUgCGGUUGuu--CGCGuaGCgCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 66267 | 0.66 | 0.913655 |
Target: 5'- cGCCguccaccggGCGCCcGCGgcugucgcAGUGCGUCagGCGCGg -3' miRNA: 3'- -CGGa--------UGCGGuUGU--------UCGCGUAG--CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 93206 | 0.66 | 0.919534 |
Target: 5'- aGCCUcggGCuCCAGC-AGCGCca-GCGCGg -3' miRNA: 3'- -CGGA---UGcGGUUGuUCGCGuagCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 38488 | 0.66 | 0.919534 |
Target: 5'- gGCCgcggcgGCGUCGACugGAGCGUcguauaaggCGCGCGc -3' miRNA: 3'- -CGGa-----UGCGGUUG--UUCGCGua-------GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 67662 | 0.66 | 0.919534 |
Target: 5'- cGUCcGCGCgCGGCGccaGGCGCGgugaGCGCGu -3' miRNA: 3'- -CGGaUGCG-GUUGU---UCGCGUag--CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 31745 | 0.66 | 0.919534 |
Target: 5'- gGCCcg-GCCGucggGCAGGCGCA-CGUGUAc -3' miRNA: 3'- -CGGaugCGGU----UGUUCGCGUaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 134093 | 0.66 | 0.919534 |
Target: 5'- aGCuCUcggcGCGCCGGCGcGCGC-UCGcCGCc -3' miRNA: 3'- -CG-GA----UGCGGUUGUuCGCGuAGC-GCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 122817 | 0.66 | 0.919534 |
Target: 5'- cGCC--CGCCAGCAcccGCGCugcgGCGCGg -3' miRNA: 3'- -CGGauGCGGUUGUu--CGCGuag-CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 118816 | 0.66 | 0.919534 |
Target: 5'- cGUCUGCGCCcugggcgcGGCAcugccgcucugcGGCGCGgagggcggCGCGCc -3' miRNA: 3'- -CGGAUGCGG--------UUGU------------UCGCGUa-------GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 90060 | 0.66 | 0.919534 |
Target: 5'- aGCCagcgGCGCCccGCGGGCGCcgaGgGCAg -3' miRNA: 3'- -CGGa---UGCGGu-UGUUCGCGuagCgCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 86237 | 0.66 | 0.919534 |
Target: 5'- uGCCgcaGCCGAUGcAGCGUcgugugCGCGCAc -3' miRNA: 3'- -CGGaugCGGUUGU-UCGCGua----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 62623 | 0.66 | 0.919534 |
Target: 5'- gGCCaucaGCGCCAGCGuguccGGCGCGaCGC-CGu -3' miRNA: 3'- -CGGa---UGCGGUUGU-----UCGCGUaGCGcGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 110507 | 0.67 | 0.894544 |
Target: 5'- gGCCaGCGUCAcggccgucgucuGCgGGGCGCAggagggCGCGCGc -3' miRNA: 3'- -CGGaUGCGGU------------UG-UUCGCGUa-----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 101221 | 0.67 | 0.894544 |
Target: 5'- cGCCgcagcGCGUCGAgguGGCGCcucagcUCGCGCAg -3' miRNA: 3'- -CGGa----UGCGGUUgu-UCGCGu-----AGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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