Results 101 - 120 of 508 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 3' | -54.9 | NC_005261.1 | + | 29955 | 0.67 | 0.894544 |
Target: 5'- uGCCgcgagGCGCUAGaggcGGCGCggUGCGCc -3' miRNA: 3'- -CGGa----UGCGGUUgu--UCGCGuaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 120216 | 0.67 | 0.894544 |
Target: 5'- uCCUgguuccagaGCGCCGACGuggAGCGCcgcuUCGcCGCGg -3' miRNA: 3'- cGGA---------UGCGGUUGU---UCGCGu---AGC-GCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 122264 | 0.67 | 0.894544 |
Target: 5'- cGCCgcCGCCGuCAGGgccguuaGCAUCaGCGCGg -3' miRNA: 3'- -CGGauGCGGUuGUUCg------CGUAG-CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 31791 | 0.67 | 0.894544 |
Target: 5'- uGCCcGCGgC-GCAGuGCGCcgCGCGCu -3' miRNA: 3'- -CGGaUGCgGuUGUU-CGCGuaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 57762 | 0.67 | 0.894544 |
Target: 5'- cGCCcgGCGCgaucuggaAGCAGuccGCgGCGUCGCGCGg -3' miRNA: 3'- -CGGa-UGCGg-------UUGUU---CG-CGUAGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 88060 | 0.67 | 0.894544 |
Target: 5'- cGCCUGCGCCGGcCGAGC-CAUgaacccagacUGCGa- -3' miRNA: 3'- -CGGAUGCGGUU-GUUCGcGUA----------GCGCgu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 99329 | 0.67 | 0.894544 |
Target: 5'- gGCCacgACGaCCGGCGcgcccAGCaGCAgCGCGCAc -3' miRNA: 3'- -CGGa--UGC-GGUUGU-----UCG-CGUaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 101221 | 0.67 | 0.894544 |
Target: 5'- cGCCgcagcGCGUCGAgguGGCGCcucagcUCGCGCAg -3' miRNA: 3'- -CGGa----UGCGGUUgu-UCGCGu-----AGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 110507 | 0.67 | 0.894544 |
Target: 5'- gGCCaGCGUCAcggccgucgucuGCgGGGCGCAggagggCGCGCGc -3' miRNA: 3'- -CGGaUGCGGU------------UG-UUCGCGUa-----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 118771 | 0.67 | 0.894544 |
Target: 5'- cGCgcGCGCCGACGcugcagacGGCGCGcugaUgGCGCAc -3' miRNA: 3'- -CGgaUGCGGUUGU--------UCGCGU----AgCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 112330 | 0.67 | 0.894544 |
Target: 5'- gGCCUcGCGCgAcuGCAAGCgggGCAUCauggGCGCGc -3' miRNA: 3'- -CGGA-UGCGgU--UGUUCG---CGUAG----CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 101461 | 0.67 | 0.894544 |
Target: 5'- gGCCccagcgcCGCCGGCGgcGGCGUgaUGCGCAg -3' miRNA: 3'- -CGGau-----GCGGUUGU--UCGCGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 32362 | 0.67 | 0.894544 |
Target: 5'- gGCCcgcgggagACGCUgguGCAGGCGCggCGCgGCGg -3' miRNA: 3'- -CGGa-------UGCGGu--UGUUCGCGuaGCG-CGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 37230 | 0.67 | 0.894544 |
Target: 5'- gGCUUGCG-CGGCGcGGCGCGUggacaGCGCGg -3' miRNA: 3'- -CGGAUGCgGUUGU-UCGCGUAg----CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 37759 | 0.67 | 0.894544 |
Target: 5'- cGCC-GCGCCGccCAAGCGCcg-GCGCc -3' miRNA: 3'- -CGGaUGCGGUu-GUUCGCGuagCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 59144 | 0.67 | 0.894544 |
Target: 5'- gGCCggcGCGCCc-CGGGCGCGcgGCGCc -3' miRNA: 3'- -CGGa--UGCGGuuGUUCGCGUagCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 74591 | 0.67 | 0.894544 |
Target: 5'- cGUCUucgUGCCgGACGAGCGgaacuuCAUCGCGCc -3' miRNA: 3'- -CGGAu--GCGG-UUGUUCGC------GUAGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 78847 | 0.67 | 0.894544 |
Target: 5'- cGCCggcgGCGCCcGCcgccgGAGCGCGagcCGCGUc -3' miRNA: 3'- -CGGa---UGCGGuUG-----UUCGCGUa--GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 80481 | 0.67 | 0.894544 |
Target: 5'- cGCCUcGCGCCAcuuggucaGCGAGCaCAcguucUUGCGCu -3' miRNA: 3'- -CGGA-UGCGGU--------UGUUCGcGU-----AGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 98209 | 0.67 | 0.894544 |
Target: 5'- aGCggGCGCCGccACGgcAGCGCggCGgGCAu -3' miRNA: 3'- -CGgaUGCGGU--UGU--UCGCGuaGCgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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