Results 1 - 20 of 508 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 3' | -54.9 | NC_005261.1 | + | 91300 | 1.1 | 0.002543 |
Target: 5'- gGCCUACGCCAACAAGCGCAUCGCGCAc -3' miRNA: 3'- -CGGAUGCGGUUGUUCGCGUAGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 82157 | 0.86 | 0.10794 |
Target: 5'- uGCCcGCGCCAGCAAGCGCggCGCGgAa -3' miRNA: 3'- -CGGaUGCGGUUGUUCGCGuaGCGCgU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 81278 | 0.85 | 0.113872 |
Target: 5'- cGCCUGCGCgAGCcgGAGCGCggCGCGCAc -3' miRNA: 3'- -CGGAUGCGgUUG--UUCGCGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 130617 | 0.83 | 0.164629 |
Target: 5'- uGCCUGCGCCuucAACAGcGCGCGgggCGCGCGu -3' miRNA: 3'- -CGGAUGCGG---UUGUU-CGCGUa--GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 77660 | 0.83 | 0.148345 |
Target: 5'- gGCCgGCGCCuGCAGGCGCAggGCGCGg -3' miRNA: 3'- -CGGaUGCGGuUGUUCGCGUagCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 104157 | 0.81 | 0.223435 |
Target: 5'- gGCCaccGCGCCGuccGCGGGCGCcgCGCGCGg -3' miRNA: 3'- -CGGa--UGCGGU---UGUUCGCGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 54006 | 0.81 | 0.207239 |
Target: 5'- cGCacagGCGCCGccGCGAGCGCuUCGCGCAc -3' miRNA: 3'- -CGga--UGCGGU--UGUUCGCGuAGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 14836 | 0.8 | 0.234821 |
Target: 5'- cGCCgggagcACGgCAGCAggcggcGGCGCAUCGCGCAg -3' miRNA: 3'- -CGGa-----UGCgGUUGU------UCGCGUAGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 46167 | 0.8 | 0.240694 |
Target: 5'- cGCCccaguCGCCGAUggGCGCAgUCGCGCu -3' miRNA: 3'- -CGGau---GCGGUUGuuCGCGU-AGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 3922 | 0.78 | 0.30201 |
Target: 5'- cGCCgGCGCCGGCcuccggguaggccauGGGCGCGUaCGCGCGc -3' miRNA: 3'- -CGGaUGCGGUUG---------------UUCGCGUA-GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 47260 | 0.78 | 0.328494 |
Target: 5'- aCCUGCGCCGGCccgccggcgaaGAGCGCcgCGUGCc -3' miRNA: 3'- cGGAUGCGGUUG-----------UUCGCGuaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 118244 | 0.78 | 0.313573 |
Target: 5'- gGCCUACGCCGucugcggcguGCcGGUGCAcugCGCGCAc -3' miRNA: 3'- -CGGAUGCGGU----------UGuUCGCGUa--GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 133018 | 0.78 | 0.320969 |
Target: 5'- -gCUGCGCCAcccGCGGGCGCGccacCGCGCAc -3' miRNA: 3'- cgGAUGCGGU---UGUUCGCGUa---GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 52972 | 0.78 | 0.323963 |
Target: 5'- cGCCggugcgGCGCCGGCAGGCgggggcggcgcccagGCGUCgGCGCAg -3' miRNA: 3'- -CGGa-----UGCGGUUGUUCG---------------CGUAG-CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 59402 | 0.77 | 0.343933 |
Target: 5'- aGCCcgggcuCGCCGGCGccGGCGCuGUCGCGCGg -3' miRNA: 3'- -CGGau----GCGGUUGU--UCGCG-UAGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 100648 | 0.77 | 0.351846 |
Target: 5'- gGCCcGCGCCGcaACGGcGCGCGUCGCGgGg -3' miRNA: 3'- -CGGaUGCGGU--UGUU-CGCGUAGCGCgU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 116944 | 0.77 | 0.351846 |
Target: 5'- cGCCUuccGCGCCAACAAGaCGCGgaagGUGCAg -3' miRNA: 3'- -CGGA---UGCGGUUGUUC-GCGUag--CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 34362 | 0.77 | 0.351846 |
Target: 5'- gGCCggGCGCC-GCGcGGCGCcgCGCGCAg -3' miRNA: 3'- -CGGa-UGCGGuUGU-UCGCGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 3733 | 0.77 | 0.343933 |
Target: 5'- uGCCggacGCGCCGGC-GGCGCAcCGCGCc -3' miRNA: 3'- -CGGa---UGCGGUUGuUCGCGUaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 58894 | 0.77 | 0.359888 |
Target: 5'- gGCCUcgcaggcgcGCGCCAGCGcGCGCAccagCGCGCc -3' miRNA: 3'- -CGGA---------UGCGGUUGUuCGCGUa---GCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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