Results 41 - 60 of 508 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 3' | -54.9 | NC_005261.1 | + | 88186 | 0.75 | 0.456428 |
Target: 5'- cGCCggcgGCGCCGGCGAG-GCGggcCGCGCc -3' miRNA: 3'- -CGGa---UGCGGUUGUUCgCGUa--GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 63018 | 0.75 | 0.474482 |
Target: 5'- cGCCcGCGCgGGCGccGGCGCccgcggcgaggcgGUCGCGCAg -3' miRNA: 3'- -CGGaUGCGgUUGU--UCGCG-------------UAGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 61116 | 0.75 | 0.456428 |
Target: 5'- cGCgCUGCGCCGu---GCGCugcuUCGCGCAa -3' miRNA: 3'- -CG-GAUGCGGUuguuCGCGu---AGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 120648 | 0.75 | 0.437831 |
Target: 5'- uGCCUGCGgCGcaaggcGCGGGCGCGccugugaucUCGCGCGc -3' miRNA: 3'- -CGGAUGCgGU------UGUUCGCGU---------AGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 104598 | 0.75 | 0.428696 |
Target: 5'- cGCCUcCGCCAGCc-GCGCGUaCGCGUc -3' miRNA: 3'- -CGGAuGCGGUUGuuCGCGUA-GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 28774 | 0.75 | 0.428696 |
Target: 5'- cGCCUGgGCCGcggcGCGGGCGC-UCGCGg- -3' miRNA: 3'- -CGGAUgCGGU----UGUUCGCGuAGCGCgu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 108353 | 0.74 | 0.50369 |
Target: 5'- gGCCgcCGCCGucGCAGGCGCAUcccugcccgcgucCGCGCc -3' miRNA: 3'- -CGGauGCGGU--UGUUCGCGUA-------------GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 70966 | 0.74 | 0.514596 |
Target: 5'- cGCCgcgACGgCGAagaaGAGCGCGUgGCGCGc -3' miRNA: 3'- -CGGa--UGCgGUUg---UUCGCGUAgCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 106820 | 0.74 | 0.514596 |
Target: 5'- gGCC--CGCCAGC-AGCGCGUgGUGCGc -3' miRNA: 3'- -CGGauGCGGUUGuUCGCGUAgCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 130115 | 0.74 | 0.514596 |
Target: 5'- -aCUGCGCCuugGCGAGcCGCcgCGCGCc -3' miRNA: 3'- cgGAUGCGGu--UGUUC-GCGuaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 116015 | 0.74 | 0.494843 |
Target: 5'- gGCCUGagcCGCCGACGGcGCGCAUggucUGCGCc -3' miRNA: 3'- -CGGAU---GCGGUUGUU-CGCGUA----GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 108208 | 0.74 | 0.485096 |
Target: 5'- -gCUGCGCCAGCAcGGCGCGcuccagcaUgGCGCAc -3' miRNA: 3'- cgGAUGCGGUUGU-UCGCGU--------AgCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 29802 | 0.74 | 0.494843 |
Target: 5'- gGCCgGCGCCGGC-GGCGCGggcgccCGCGCc -3' miRNA: 3'- -CGGaUGCGGUUGuUCGCGUa-----GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 1929 | 0.74 | 0.524592 |
Target: 5'- cGCaCUGCGCC-GCGGGCaGCAccgcggCGCGCAg -3' miRNA: 3'- -CG-GAUGCGGuUGUUCG-CGUa-----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 1874 | 0.74 | 0.504677 |
Target: 5'- cGCCgcgAgGCCAGCAcGGCGCGcgccagCGCGCGc -3' miRNA: 3'- -CGGa--UgCGGUUGU-UCGCGUa-----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 56491 | 0.74 | 0.504677 |
Target: 5'- aGUCUaugcGCGCCu-CAGGCGCGUuUGCGCAa -3' miRNA: 3'- -CGGA----UGCGGuuGUUCGCGUA-GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 71950 | 0.74 | 0.504677 |
Target: 5'- cGCCccacugGCGUCGGCGcggGGCGCGgagCGCGCGg -3' miRNA: 3'- -CGGa-----UGCGGUUGU---UCGCGUa--GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 106158 | 0.74 | 0.494843 |
Target: 5'- cGCCUcgccgcuccGCGCUAAUAcuagggGGCGCcgCGCGCGu -3' miRNA: 3'- -CGGA---------UGCGGUUGU------UCGCGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 110303 | 0.74 | 0.485096 |
Target: 5'- cGCCUGCGCCGcCGAGUacgGCAacCGCGCc -3' miRNA: 3'- -CGGAUGCGGUuGUUCG---CGUa-GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 100929 | 0.73 | 0.544798 |
Target: 5'- cGCCUGCaGCCGcuGCAGGCccGCGUCcacgGCGCGc -3' miRNA: 3'- -CGGAUG-CGGU--UGUUCG--CGUAG----CGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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