Results 81 - 100 of 508 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 3' | -54.9 | NC_005261.1 | + | 30131 | 0.73 | 0.534661 |
Target: 5'- gGCCcgcgACGCgGugGAGCGCG-CGCGCc -3' miRNA: 3'- -CGGa---UGCGgUugUUCGCGUaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 4497 | 0.73 | 0.56525 |
Target: 5'- aGCCUGCGCgGGCcccagucGCGCGccCGCGCGg -3' miRNA: 3'- -CGGAUGCGgUUGuu-----CGCGUa-GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 115830 | 0.73 | 0.554996 |
Target: 5'- --gUGCGCCAGCuugGGCGCGUuggccCGCGCGg -3' miRNA: 3'- cggAUGCGGUUGu--UCGCGUA-----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 23316 | 0.73 | 0.559092 |
Target: 5'- gGCCgagcagaaagaaGCCGACGAGCGCGcgGCGCAg -3' miRNA: 3'- -CGGaug---------CGGUUGUUCGCGUagCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 59491 | 0.73 | 0.544798 |
Target: 5'- gGCCgccGCGCCAGCGgcggcGGuCGCA-CGCGCGc -3' miRNA: 3'- -CGGa--UGCGGUUGU-----UC-GCGUaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 131597 | 0.73 | 0.56525 |
Target: 5'- gGCCUACGCgcGCGcGCGCAcguaCGCGCGc -3' miRNA: 3'- -CGGAUGCGguUGUuCGCGUa---GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 126070 | 0.73 | 0.543782 |
Target: 5'- aGCCgccCGCCGgccucgGCGGGCGCGcccaucuUCGCGCGu -3' miRNA: 3'- -CGGau-GCGGU------UGUUCGCGU-------AGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 60164 | 0.73 | 0.554996 |
Target: 5'- cGCCgcUGCCGugGaAGCGCGUCuGCGCc -3' miRNA: 3'- -CGGauGCGGUugU-UCGCGUAG-CGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 78333 | 0.73 | 0.585896 |
Target: 5'- cGCCgacGCGCCAACGcgguaccucgGGCGCcaCGCGCc -3' miRNA: 3'- -CGGa--UGCGGUUGU----------UCGCGuaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 100929 | 0.73 | 0.544798 |
Target: 5'- cGCCUGCaGCCGcuGCAGGCccGCGUCcacgGCGCGc -3' miRNA: 3'- -CGGAUG-CGGU--UGUUCG--CGUAG----CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 133943 | 0.72 | 0.637986 |
Target: 5'- aCCUGCGCCA---GGCGCG--GCGCAu -3' miRNA: 3'- cGGAUGCGGUuguUCGCGUagCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 98319 | 0.72 | 0.595235 |
Target: 5'- cGCCgcCGCCAGCGgcGGCGCgccccguGUCGaCGCGg -3' miRNA: 3'- -CGGauGCGGUUGU--UCGCG-------UAGC-GCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 29195 | 0.72 | 0.596275 |
Target: 5'- cGCCgcgGCGCCcgcGCGGGCGCGcgacuggggccCGCGCAg -3' miRNA: 3'- -CGGa--UGCGGu--UGUUCGCGUa----------GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 94836 | 0.72 | 0.636942 |
Target: 5'- gGCCUucacggcGCGCCuGGCcucGGCGC-UCGCGCAc -3' miRNA: 3'- -CGGA-------UGCGG-UUGu--UCGCGuAGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 122471 | 0.72 | 0.596275 |
Target: 5'- aGCgUACGCCAggaucuccuGCAAGCGCGUCucuGUGUc -3' miRNA: 3'- -CGgAUGCGGU---------UGUUCGCGUAG---CGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 39865 | 0.72 | 0.637986 |
Target: 5'- cGCCcagGCacacgGCCAGCAGGcCGCG-CGCGCGg -3' miRNA: 3'- -CGGa--UG-----CGGUUGUUC-GCGUaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 55166 | 0.72 | 0.637986 |
Target: 5'- cGCCgcCGCCGGCGgcucgcggGGCGgAUCgGCGCAc -3' miRNA: 3'- -CGGauGCGGUUGU--------UCGCgUAG-CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 70810 | 0.72 | 0.596275 |
Target: 5'- aGUCcGCGCCGGCGgccccgGGCGCGccggCGCGCGc -3' miRNA: 3'- -CGGaUGCGGUUGU------UCGCGUa---GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 123517 | 0.72 | 0.596275 |
Target: 5'- uGCCgcgucCGCUAGCAAGCuGUAcCGCGCGa -3' miRNA: 3'- -CGGau---GCGGUUGUUCG-CGUaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 75223 | 0.72 | 0.595235 |
Target: 5'- gGCgCUGCaGuCCAGCGGGCGCAUguacgugggcaacCGCGCGu -3' miRNA: 3'- -CG-GAUG-C-GGUUGUUCGCGUA-------------GCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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