miRNA display CGI


Results 1 - 20 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 91300 1.1 0.002543
Target:  5'- gGCCUACGCCAACAAGCGCAUCGCGCAc -3'
miRNA:   3'- -CGGAUGCGGUUGUUCGCGUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 82157 0.86 0.10794
Target:  5'- uGCCcGCGCCAGCAAGCGCggCGCGgAa -3'
miRNA:   3'- -CGGaUGCGGUUGUUCGCGuaGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 81278 0.85 0.113872
Target:  5'- cGCCUGCGCgAGCcgGAGCGCggCGCGCAc -3'
miRNA:   3'- -CGGAUGCGgUUG--UUCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 77660 0.83 0.148345
Target:  5'- gGCCgGCGCCuGCAGGCGCAggGCGCGg -3'
miRNA:   3'- -CGGaUGCGGuUGUUCGCGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 130617 0.83 0.164629
Target:  5'- uGCCUGCGCCuucAACAGcGCGCGgggCGCGCGu -3'
miRNA:   3'- -CGGAUGCGG---UUGUU-CGCGUa--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 54006 0.81 0.207239
Target:  5'- cGCacagGCGCCGccGCGAGCGCuUCGCGCAc -3'
miRNA:   3'- -CGga--UGCGGU--UGUUCGCGuAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 104157 0.81 0.223435
Target:  5'- gGCCaccGCGCCGuccGCGGGCGCcgCGCGCGg -3'
miRNA:   3'- -CGGa--UGCGGU---UGUUCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 14836 0.8 0.234821
Target:  5'- cGCCgggagcACGgCAGCAggcggcGGCGCAUCGCGCAg -3'
miRNA:   3'- -CGGa-----UGCgGUUGU------UCGCGUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 46167 0.8 0.240694
Target:  5'- cGCCccaguCGCCGAUggGCGCAgUCGCGCu -3'
miRNA:   3'- -CGGau---GCGGUUGuuCGCGU-AGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 3922 0.78 0.30201
Target:  5'- cGCCgGCGCCGGCcuccggguaggccauGGGCGCGUaCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGUUG---------------UUCGCGUA-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 118244 0.78 0.313573
Target:  5'- gGCCUACGCCGucugcggcguGCcGGUGCAcugCGCGCAc -3'
miRNA:   3'- -CGGAUGCGGU----------UGuUCGCGUa--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 133018 0.78 0.320969
Target:  5'- -gCUGCGCCAcccGCGGGCGCGccacCGCGCAc -3'
miRNA:   3'- cgGAUGCGGU---UGUUCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 52972 0.78 0.323963
Target:  5'- cGCCggugcgGCGCCGGCAGGCgggggcggcgcccagGCGUCgGCGCAg -3'
miRNA:   3'- -CGGa-----UGCGGUUGUUCG---------------CGUAG-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 47260 0.78 0.328494
Target:  5'- aCCUGCGCCGGCccgccggcgaaGAGCGCcgCGUGCc -3'
miRNA:   3'- cGGAUGCGGUUG-----------UUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 3733 0.77 0.343933
Target:  5'- uGCCggacGCGCCGGC-GGCGCAcCGCGCc -3'
miRNA:   3'- -CGGa---UGCGGUUGuUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 59402 0.77 0.343933
Target:  5'- aGCCcgggcuCGCCGGCGccGGCGCuGUCGCGCGg -3'
miRNA:   3'- -CGGau----GCGGUUGU--UCGCG-UAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 100648 0.77 0.351846
Target:  5'- gGCCcGCGCCGcaACGGcGCGCGUCGCGgGg -3'
miRNA:   3'- -CGGaUGCGGU--UGUU-CGCGUAGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 46228 0.77 0.351846
Target:  5'- gGCC-GCGUgGACGAGCGCGUCGCa-- -3'
miRNA:   3'- -CGGaUGCGgUUGUUCGCGUAGCGcgu -5'
23599 3' -54.9 NC_005261.1 + 116944 0.77 0.351846
Target:  5'- cGCCUuccGCGCCAACAAGaCGCGgaagGUGCAg -3'
miRNA:   3'- -CGGA---UGCGGUUGUUC-GCGUag--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 34362 0.77 0.351846
Target:  5'- gGCCggGCGCC-GCGcGGCGCcgCGCGCAg -3'
miRNA:   3'- -CGGa-UGCGGuUGU-UCGCGuaGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.