miRNA display CGI


Results 21 - 40 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 121641 0.77 0.359888
Target:  5'- gGCCgcCGCCGGCGAGCGCGggcugucCGCGUc -3'
miRNA:   3'- -CGGauGCGGUUGUUCGCGUa------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 58894 0.77 0.359888
Target:  5'- gGCCUcgcaggcgcGCGCCAGCGcGCGCAccagCGCGCc -3'
miRNA:   3'- -CGGA---------UGCGGUUGUuCGCGUa---GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 70470 0.77 0.359888
Target:  5'- aGCCcGCGCC-GCGGGUGCG-CGCGCGu -3'
miRNA:   3'- -CGGaUGCGGuUGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 134518 0.77 0.359888
Target:  5'- aGCCUGCGCCuGCAGcUGCugggCGCGCAg -3'
miRNA:   3'- -CGGAUGCGGuUGUUcGCGua--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 73360 0.77 0.368057
Target:  5'- cGCCggcucaggcgGCGCCAGC-AGCGCGgccacgCGCGCGu -3'
miRNA:   3'- -CGGa---------UGCGGUUGuUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 46982 0.77 0.368057
Target:  5'- cGCCgccCGCCGGCAGcGCGCGcCGCGCc -3'
miRNA:   3'- -CGGau-GCGGUUGUU-CGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 2740 0.76 0.384773
Target:  5'- cGCUUGCGCCGcgGCGGGC-CGUCGCgGCGg -3'
miRNA:   3'- -CGGAUGCGGU--UGUUCGcGUAGCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 46564 0.76 0.384773
Target:  5'- cGCgaGCGCUgcuGCGAGCGCGgccUCGCGCGa -3'
miRNA:   3'- -CGgaUGCGGu--UGUUCGCGU---AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 69282 0.76 0.393317
Target:  5'- cGCCcGCGCCGACcccGGCGCGggGCGCc -3'
miRNA:   3'- -CGGaUGCGGUUGu--UCGCGUagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 70558 0.76 0.399371
Target:  5'- cGCCgcaggGCGCCGcgaagagcucgggcGCGAGCGCAgcggCGUGCGc -3'
miRNA:   3'- -CGGa----UGCGGU--------------UGUUCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 116175 0.76 0.401984
Target:  5'- gGCCgcguccccgACGCCGcUggGCGCGUCGcCGCAg -3'
miRNA:   3'- -CGGa--------UGCGGUuGuuCGCGUAGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 83368 0.76 0.41077
Target:  5'- cGUCcACGUCGGCGAGCGCGgcgaGCGCGg -3'
miRNA:   3'- -CGGaUGCGGUUGUUCGCGUag--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 96936 0.76 0.41077
Target:  5'- cCCgagACGCCcACGGGCGCAUCG-GCGg -3'
miRNA:   3'- cGGa--UGCGGuUGUUCGCGUAGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 101625 0.76 0.419675
Target:  5'- cGCCUcucGCGCC-GCGGcCGCGUCGCGCc -3'
miRNA:   3'- -CGGA---UGCGGuUGUUcGCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 28774 0.75 0.428696
Target:  5'- cGCCUGgGCCGcggcGCGGGCGC-UCGCGg- -3'
miRNA:   3'- -CGGAUgCGGU----UGUUCGCGuAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 95804 0.75 0.428696
Target:  5'- aGCCgGCGCCGGCGGGgGC-UCGCGg- -3'
miRNA:   3'- -CGGaUGCGGUUGUUCgCGuAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 104598 0.75 0.428696
Target:  5'- cGCCUcCGCCAGCc-GCGCGUaCGCGUc -3'
miRNA:   3'- -CGGAuGCGGUUGuuCGCGUA-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 120648 0.75 0.437831
Target:  5'- uGCCUGCGgCGcaaggcGCGGGCGCGccugugaucUCGCGCGc -3'
miRNA:   3'- -CGGAUGCgGU------UGUUCGCGU---------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 124242 0.75 0.437831
Target:  5'- cGCCgcCGCgGGCAGGCGCcgCGCGg- -3'
miRNA:   3'- -CGGauGCGgUUGUUCGCGuaGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 118906 0.75 0.452674
Target:  5'- gGCCUGCGUCuggguccggcgccGCGGGCGCGgcgcCGCGCGg -3'
miRNA:   3'- -CGGAUGCGGu------------UGUUCGCGUa---GCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.