miRNA display CGI


Results 41 - 60 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 108545 0.75 0.456428
Target:  5'- gGCCagcgcCGCCGACAcGCGCAcgUCGUGCGa -3'
miRNA:   3'- -CGGau---GCGGUUGUuCGCGU--AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 88186 0.75 0.456428
Target:  5'- cGCCggcgGCGCCGGCGAG-GCGggcCGCGCc -3'
miRNA:   3'- -CGGa---UGCGGUUGUUCgCGUa--GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 76019 0.75 0.456428
Target:  5'- cGCCgcgcaGCGCC-GCGGGCGCccCGCGCGc -3'
miRNA:   3'- -CGGa----UGCGGuUGUUCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 61116 0.75 0.456428
Target:  5'- cGCgCUGCGCCGu---GCGCugcuUCGCGCAa -3'
miRNA:   3'- -CG-GAUGCGGUuguuCGCGu---AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 63018 0.75 0.474482
Target:  5'- cGCCcGCGCgGGCGccGGCGCccgcggcgaggcgGUCGCGCAg -3'
miRNA:   3'- -CGGaUGCGgUUGU--UCGCG-------------UAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 85991 0.75 0.475442
Target:  5'- aGCUgcgcCGCCGACGGG-GCGUCGUGCGc -3'
miRNA:   3'- -CGGau--GCGGUUGUUCgCGUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 110303 0.74 0.485096
Target:  5'- cGCCUGCGCCGcCGAGUacgGCAacCGCGCc -3'
miRNA:   3'- -CGGAUGCGGUuGUUCG---CGUa-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 108208 0.74 0.485096
Target:  5'- -gCUGCGCCAGCAcGGCGCGcuccagcaUgGCGCAc -3'
miRNA:   3'- cgGAUGCGGUUGU-UCGCGU--------AgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 116015 0.74 0.494843
Target:  5'- gGCCUGagcCGCCGACGGcGCGCAUggucUGCGCc -3'
miRNA:   3'- -CGGAU---GCGGUUGUU-CGCGUA----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 29802 0.74 0.494843
Target:  5'- gGCCgGCGCCGGC-GGCGCGggcgccCGCGCc -3'
miRNA:   3'- -CGGaUGCGGUUGuUCGCGUa-----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 106158 0.74 0.494843
Target:  5'- cGCCUcgccgcuccGCGCUAAUAcuagggGGCGCcgCGCGCGu -3'
miRNA:   3'- -CGGA---------UGCGGUUGU------UCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 108353 0.74 0.50369
Target:  5'- gGCCgcCGCCGucGCAGGCGCAUcccugcccgcgucCGCGCc -3'
miRNA:   3'- -CGGauGCGGU--UGUUCGCGUA-------------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 56491 0.74 0.504677
Target:  5'- aGUCUaugcGCGCCu-CAGGCGCGUuUGCGCAa -3'
miRNA:   3'- -CGGA----UGCGGuuGUUCGCGUA-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 1874 0.74 0.504677
Target:  5'- cGCCgcgAgGCCAGCAcGGCGCGcgccagCGCGCGc -3'
miRNA:   3'- -CGGa--UgCGGUUGU-UCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 71950 0.74 0.504677
Target:  5'- cGCCccacugGCGUCGGCGcggGGCGCGgagCGCGCGg -3'
miRNA:   3'- -CGGa-----UGCGGUUGU---UCGCGUa--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 106820 0.74 0.514596
Target:  5'- gGCC--CGCCAGC-AGCGCGUgGUGCGc -3'
miRNA:   3'- -CGGauGCGGUUGuUCGCGUAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 130115 0.74 0.514596
Target:  5'- -aCUGCGCCuugGCGAGcCGCcgCGCGCc -3'
miRNA:   3'- cgGAUGCGGu--UGUUC-GCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 70966 0.74 0.514596
Target:  5'- cGCCgcgACGgCGAagaaGAGCGCGUgGCGCGc -3'
miRNA:   3'- -CGGa--UGCgGUUg---UUCGCGUAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 1929 0.74 0.524592
Target:  5'- cGCaCUGCGCC-GCGGGCaGCAccgcggCGCGCAg -3'
miRNA:   3'- -CG-GAUGCGGuUGUUCG-CGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 117314 0.73 0.533651
Target:  5'- aGCCccgGCGCgggCAGCAAGCGCAUccuugccCGCGCc -3'
miRNA:   3'- -CGGa--UGCG---GUUGUUCGCGUA-------GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.