miRNA display CGI


Results 61 - 80 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 4921 0.73 0.534661
Target:  5'- uGCCUcCGCCGcggccGCGAGCGCc-CGCGCc -3'
miRNA:   3'- -CGGAuGCGGU-----UGUUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 103402 0.73 0.534661
Target:  5'- cGCCUGCGCCuccagcuccgcGCGGGcCGCGgccacgCGCGCGc -3'
miRNA:   3'- -CGGAUGCGGu----------UGUUC-GCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 30131 0.73 0.534661
Target:  5'- gGCCcgcgACGCgGugGAGCGCG-CGCGCc -3'
miRNA:   3'- -CGGa---UGCGgUugUUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 44188 0.73 0.534661
Target:  5'- aGCUccGCGCCAGCGAGCGCga-GCuGCAg -3'
miRNA:   3'- -CGGa-UGCGGUUGUUCGCGuagCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 132871 0.73 0.534661
Target:  5'- aGCCUGCGCCugcccuucuucGGCAagccgGGCGCcgCGgGCGg -3'
miRNA:   3'- -CGGAUGCGG-----------UUGU-----UCGCGuaGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 126070 0.73 0.543782
Target:  5'- aGCCgccCGCCGgccucgGCGGGCGCGcccaucuUCGCGCGu -3'
miRNA:   3'- -CGGau-GCGGU------UGUUCGCGU-------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 100929 0.73 0.544798
Target:  5'- cGCCUGCaGCCGcuGCAGGCccGCGUCcacgGCGCGc -3'
miRNA:   3'- -CGGAUG-CGGU--UGUUCG--CGUAG----CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 59491 0.73 0.544798
Target:  5'- gGCCgccGCGCCAGCGgcggcGGuCGCA-CGCGCGc -3'
miRNA:   3'- -CGGa--UGCGGUUGU-----UC-GCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 104688 0.73 0.551931
Target:  5'- cGCCUGgGCCAccgccccgaagaGCGgcuggacggccgagGGCGCGUCGUGCc -3'
miRNA:   3'- -CGGAUgCGGU------------UGU--------------UCGCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 82348 0.73 0.554996
Target:  5'- uGCCggcgcACGUCGGCGucGGCGCG-CGCGCGc -3'
miRNA:   3'- -CGGa----UGCGGUUGU--UCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 60164 0.73 0.554996
Target:  5'- cGCCgcUGCCGugGaAGCGCGUCuGCGCc -3'
miRNA:   3'- -CGGauGCGGUugU-UCGCGUAG-CGCGu -5'
23599 3' -54.9 NC_005261.1 + 127858 0.73 0.554996
Target:  5'- gGUCgcgGCGCCAgggcACGAGCGggaGUCGCGCc -3'
miRNA:   3'- -CGGa--UGCGGU----UGUUCGCg--UAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 129317 0.73 0.554996
Target:  5'- cGCCUGCGCUGGCGc-CGCGUCGC-CGa -3'
miRNA:   3'- -CGGAUGCGGUUGUucGCGUAGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 115830 0.73 0.554996
Target:  5'- --gUGCGCCAGCuugGGCGCGUuggccCGCGCGg -3'
miRNA:   3'- cggAUGCGGUUGu--UCGCGUA-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 23316 0.73 0.559092
Target:  5'- gGCCgagcagaaagaaGCCGACGAGCGCGcgGCGCAg -3'
miRNA:   3'- -CGGaug---------CGGUUGUUCGCGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 102818 0.73 0.56525
Target:  5'- cGCCgcGCGCCggUcuGCGCcUCGCGCc -3'
miRNA:   3'- -CGGa-UGCGGuuGuuCGCGuAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 4497 0.73 0.56525
Target:  5'- aGCCUGCGCgGGCcccagucGCGCGccCGCGCGg -3'
miRNA:   3'- -CGGAUGCGgUUGuu-----CGCGUa-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 23179 0.73 0.56525
Target:  5'- cGCCggggGCGaCAGCGAGCGCGcCGCGgGg -3'
miRNA:   3'- -CGGa---UGCgGUUGUUCGCGUaGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 131597 0.73 0.56525
Target:  5'- gGCCUACGCgcGCGcGCGCAcguaCGCGCGc -3'
miRNA:   3'- -CGGAUGCGguUGUuCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 82738 0.73 0.575552
Target:  5'- aGCC-GCGCCAGCccgucuGCG-AUCGCGCGg -3'
miRNA:   3'- -CGGaUGCGGUUGuu----CGCgUAGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.