miRNA display CGI


Results 81 - 100 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 124309 0.73 0.575552
Target:  5'- cGCaCUACGCgCAGC-AGCGCGUC-CGCc -3'
miRNA:   3'- -CG-GAUGCG-GUUGuUCGCGUAGcGCGu -5'
23599 3' -54.9 NC_005261.1 + 93340 0.73 0.575552
Target:  5'- cGUCcGCGCgCAGCGcGCGCAgCGCGCGc -3'
miRNA:   3'- -CGGaUGCG-GUUGUuCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 88483 0.73 0.575552
Target:  5'- uGCC-GCGCCG--GAGCGCGcCGCGCu -3'
miRNA:   3'- -CGGaUGCGGUugUUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 72486 0.73 0.575552
Target:  5'- gGCCaGCGCCAG-GAGCGCcgCGCGa- -3'
miRNA:   3'- -CGGaUGCGGUUgUUCGCGuaGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 82738 0.73 0.575552
Target:  5'- aGCC-GCGCCAGCccgucuGCG-AUCGCGCGg -3'
miRNA:   3'- -CGGaUGCGGUUGuu----CGCgUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 78333 0.73 0.585896
Target:  5'- cGCCgacGCGCCAACGcgguaccucgGGCGCcaCGCGCc -3'
miRNA:   3'- -CGGa--UGCGGUUGU----------UCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 36172 0.73 0.585896
Target:  5'- gGCUUuuaugcCGCCGGC-AGCGCAUgCGCGCu -3'
miRNA:   3'- -CGGAu-----GCGGUUGuUCGCGUA-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 100726 0.73 0.585896
Target:  5'- gGCC-GCGCCGcgcGCGcGCGCGgcggCGCGCGg -3'
miRNA:   3'- -CGGaUGCGGU---UGUuCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 93967 0.73 0.585896
Target:  5'- gGCCgucgACGCCAAC-AGCGCc-CGCGUc -3'
miRNA:   3'- -CGGa---UGCGGUUGuUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 36769 0.73 0.585896
Target:  5'- cCCUgcACGCCGGCccGUGCGUUGCGCc -3'
miRNA:   3'- cGGA--UGCGGUUGuuCGCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 75223 0.72 0.595235
Target:  5'- gGCgCUGCaGuCCAGCGGGCGCAUguacgugggcaacCGCGCGu -3'
miRNA:   3'- -CG-GAUG-C-GGUUGUUCGCGUA-------------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 98319 0.72 0.595235
Target:  5'- cGCCgcCGCCAGCGgcGGCGCgccccguGUCGaCGCGg -3'
miRNA:   3'- -CGGauGCGGUUGU--UCGCG-------UAGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 66007 0.72 0.596275
Target:  5'- cGCCUuuacgcGCGCCAccGCcGGCGCGUCGUagucgGCGg -3'
miRNA:   3'- -CGGA------UGCGGU--UGuUCGCGUAGCG-----CGU- -5'
23599 3' -54.9 NC_005261.1 + 41278 0.72 0.596275
Target:  5'- cGCuCUGCGCCcuGACGAaccCGuCGUCGCGCAg -3'
miRNA:   3'- -CG-GAUGCGG--UUGUUc--GC-GUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 70810 0.72 0.596275
Target:  5'- aGUCcGCGCCGGCGgccccgGGCGCGccggCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGUUGU------UCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 122471 0.72 0.596275
Target:  5'- aGCgUACGCCAggaucuccuGCAAGCGCGUCucuGUGUc -3'
miRNA:   3'- -CGgAUGCGGU---------UGUUCGCGUAG---CGCGu -5'
23599 3' -54.9 NC_005261.1 + 123517 0.72 0.596275
Target:  5'- uGCCgcgucCGCUAGCAAGCuGUAcCGCGCGa -3'
miRNA:   3'- -CGGau---GCGGUUGUUCG-CGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 134226 0.72 0.596275
Target:  5'- gGCCggcaGCGUCGGCGuGGCGCA-CGCGCc -3'
miRNA:   3'- -CGGa---UGCGGUUGU-UCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 29195 0.72 0.596275
Target:  5'- cGCCgcgGCGCCcgcGCGGGCGCGcgacuggggccCGCGCAg -3'
miRNA:   3'- -CGGa--UGCGGu--UGUUCGCGUa----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 127801 0.72 0.596275
Target:  5'- gGCCgGCGCCGcggcgGCGGGcCGC-UCGCGCu -3'
miRNA:   3'- -CGGaUGCGGU-----UGUUC-GCGuAGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.