miRNA display CGI


Results 101 - 120 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 103114 0.72 0.603557
Target:  5'- cGCCcccgGCGCCAGCGcgcccggguucuccAGCGCcUCGCGg- -3'
miRNA:   3'- -CGGa---UGCGGUUGU--------------UCGCGuAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 130246 0.72 0.60564
Target:  5'- cGCC-GCGCCAGCGgcucguacugcggGGCGUccCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGUUGU-------------UCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 5267 0.72 0.606681
Target:  5'- cGCCgggagACGCCAugGccGGcCGCGgugCGCGCGg -3'
miRNA:   3'- -CGGa----UGCGGUugU--UC-GCGUa--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 83584 0.72 0.606681
Target:  5'- cGCCcgcggcCGCCAGC-AGCGCGUCGCu-- -3'
miRNA:   3'- -CGGau----GCGGUUGuUCGCGUAGCGcgu -5'
23599 3' -54.9 NC_005261.1 + 46726 0.72 0.606681
Target:  5'- gGCCUcguACGCCGGCGcGUGCA-CGUGCc -3'
miRNA:   3'- -CGGA---UGCGGUUGUuCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 50682 0.72 0.606681
Target:  5'- cGCCguauaacauccGCGCCAGCGAcGCGC-UCGaCGCAu -3'
miRNA:   3'- -CGGa----------UGCGGUUGUU-CGCGuAGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 51656 0.72 0.617107
Target:  5'- cGCCUucggcACGCUAguggccGCGAGCuGCAUCGCGg- -3'
miRNA:   3'- -CGGA-----UGCGGU------UGUUCG-CGUAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 132739 0.72 0.617107
Target:  5'- gGCCc-CGCacuCAAGgGCAUCGCGCGc -3'
miRNA:   3'- -CGGauGCGguuGUUCgCGUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 47938 0.72 0.617107
Target:  5'- cCCgcGCGCCGcgcGCGAGCGCGUucacgcugCGCGCGa -3'
miRNA:   3'- cGGa-UGCGGU---UGUUCGCGUA--------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 13661 0.72 0.617107
Target:  5'- uGCCgcCGCCGcgggGgGGGCGCGgggCGCGCGg -3'
miRNA:   3'- -CGGauGCGGU----UgUUCGCGUa--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 20596 0.72 0.617107
Target:  5'- gGCCUACGUCGACAcAGCGCcccuggCcCGCAu -3'
miRNA:   3'- -CGGAUGCGGUUGU-UCGCGua----GcGCGU- -5'
23599 3' -54.9 NC_005261.1 + 45423 0.72 0.617107
Target:  5'- cGCCUGCGCCcGCc-GC-CcgCGCGCAa -3'
miRNA:   3'- -CGGAUGCGGuUGuuCGcGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 3761 0.72 0.626501
Target:  5'- cGCCUcuaGCGCCucgcGGCAggccgcAGCGCAgcgguccgccagcUCGCGCAg -3'
miRNA:   3'- -CGGA---UGCGG----UUGU------UCGCGU-------------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 116625 0.72 0.627545
Target:  5'- cGCCcgccCGCCGACGAGgGCGaggccCGCGCGc -3'
miRNA:   3'- -CGGau--GCGGUUGUUCgCGUa----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 62338 0.72 0.627545
Target:  5'- cGCCUccaccgcgcGCGCCAcCAcGCGCGccaccagcUCGCGCGc -3'
miRNA:   3'- -CGGA---------UGCGGUuGUuCGCGU--------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 67710 0.72 0.627545
Target:  5'- cGCCcccgUACGCCGAC-AGCGCGaCGCaccGCAg -3'
miRNA:   3'- -CGG----AUGCGGUUGuUCGCGUaGCG---CGU- -5'
23599 3' -54.9 NC_005261.1 + 74761 0.72 0.627545
Target:  5'- gGCagcGCGCC-ACAGGCGCGgaggucgacgCGCGCAu -3'
miRNA:   3'- -CGga-UGCGGuUGUUCGCGUa---------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 3863 0.72 0.627545
Target:  5'- cGCCgcGCgGCCGGCGAGCaCggCGCGCAg -3'
miRNA:   3'- -CGGa-UG-CGGUUGUUCGcGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 94836 0.72 0.636942
Target:  5'- gGCCUucacggcGCGCCuGGCcucGGCGC-UCGCGCAc -3'
miRNA:   3'- -CGGA-------UGCGG-UUGu--UCGCGuAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 133943 0.72 0.637986
Target:  5'- aCCUGCGCCA---GGCGCG--GCGCAu -3'
miRNA:   3'- cGGAUGCGGUuguUCGCGUagCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.