miRNA display CGI


Results 121 - 140 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 133943 0.72 0.637986
Target:  5'- aCCUGCGCCA---GGCGCG--GCGCAu -3'
miRNA:   3'- cGGAUGCGGUuguUCGCGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 55166 0.72 0.637986
Target:  5'- cGCCgcCGCCGGCGgcucgcggGGCGgAUCgGCGCAc -3'
miRNA:   3'- -CGGauGCGGUUGU--------UCGCgUAG-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 42491 0.71 0.648423
Target:  5'- uUUUGCG-CGGCGAcGCGCGUCGCGCc -3'
miRNA:   3'- cGGAUGCgGUUGUU-CGCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 100065 0.71 0.648423
Target:  5'- cGCCgcCGCCcGgGGGCGCGcCGCGCc -3'
miRNA:   3'- -CGGauGCGGuUgUUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 133642 0.71 0.658846
Target:  5'- cGCC-GCGCCGcugcGCGAGCGCugCGUGCu -3'
miRNA:   3'- -CGGaUGCGGU----UGUUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 102281 0.71 0.658846
Target:  5'- gGCCUgccGCGCCAGCGGcCGCGggucguagcCGCGCGc -3'
miRNA:   3'- -CGGA---UGCGGUUGUUcGCGUa--------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 42210 0.71 0.658846
Target:  5'- cGCCgcgcggGCGCCccgccGCGAGCuccGCcgCGCGCAg -3'
miRNA:   3'- -CGGa-----UGCGGu----UGUUCG---CGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 76219 0.71 0.658846
Target:  5'- cGCCUGCGCCGcgcgcuugACGAGaCGCG--GCGCc -3'
miRNA:   3'- -CGGAUGCGGU--------UGUUC-GCGUagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 105282 0.71 0.658846
Target:  5'- gGCa-GCGCCGGCGAGCcCGggCGCGCGa -3'
miRNA:   3'- -CGgaUGCGGUUGUUCGcGUa-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 120331 0.71 0.658846
Target:  5'- cGCgCUGCGUCccCGAGCGCGUCucccuGCGCu -3'
miRNA:   3'- -CG-GAUGCGGuuGUUCGCGUAG-----CGCGu -5'
23599 3' -54.9 NC_005261.1 + 100994 0.71 0.658846
Target:  5'- cGCCgcgcucCGCCAGCc-GCGCGUCcaGCGCGc -3'
miRNA:   3'- -CGGau----GCGGUUGuuCGCGUAG--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 61531 0.71 0.658846
Target:  5'- gGCCUuCuCCGGCAAGCGCcgCgGCGCc -3'
miRNA:   3'- -CGGAuGcGGUUGUUCGCGuaG-CGCGu -5'
23599 3' -54.9 NC_005261.1 + 31942 0.71 0.66301
Target:  5'- uGCCgcgGCGCCAACGuGCGCuacacgguggccaCGCGCc -3'
miRNA:   3'- -CGGa--UGCGGUUGUuCGCGua-----------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 74188 0.71 0.66613
Target:  5'- cGCCUGCcggcucagaccaucGCCAGCAAcGCGC--CGCGCc -3'
miRNA:   3'- -CGGAUG--------------CGGUUGUU-CGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 111349 0.71 0.669247
Target:  5'- aGCCgGCGCCGACc-GCGCGUCuGCuGCc -3'
miRNA:   3'- -CGGaUGCGGUUGuuCGCGUAG-CG-CGu -5'
23599 3' -54.9 NC_005261.1 + 68558 0.71 0.669247
Target:  5'- -gCUGCGCgGGCucuuuGAGCGCGUCGcCGCc -3'
miRNA:   3'- cgGAUGCGgUUG-----UUCGCGUAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 113313 0.71 0.669247
Target:  5'- gGCCUGgGcCCGGCu-GCGCGagaaggUCGCGCGg -3'
miRNA:   3'- -CGGAUgC-GGUUGuuCGCGU------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 100524 0.71 0.669247
Target:  5'- aGCCgcgcgGCGCCAGCGcgucgaucuccgAGUccGCcUCGCGCAg -3'
miRNA:   3'- -CGGa----UGCGGUUGU------------UCG--CGuAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 70088 0.71 0.669247
Target:  5'- aGCCcagacgUACGCCGGCGagaagcucGGCGCcUCGUGCc -3'
miRNA:   3'- -CGG------AUGCGGUUGU--------UCGCGuAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 122619 0.71 0.669247
Target:  5'- uGCCUGUGCUugaacGGCGAGCGCGaggcccggCGCGCGu -3'
miRNA:   3'- -CGGAUGCGG-----UUGUUCGCGUa-------GCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.