miRNA display CGI


Results 21 - 40 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 86237 0.66 0.919534
Target:  5'- uGCCgcaGCCGAUGcAGCGUcgugugCGCGCAc -3'
miRNA:   3'- -CGGaugCGGUUGU-UCGCGua----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 62623 0.66 0.919534
Target:  5'- gGCCaucaGCGCCAGCGuguccGGCGCGaCGC-CGu -3'
miRNA:   3'- -CGGa---UGCGGUUGU-----UCGCGUaGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 38488 0.66 0.919534
Target:  5'- gGCCgcggcgGCGUCGACugGAGCGUcguauaaggCGCGCGc -3'
miRNA:   3'- -CGGa-----UGCGGUUG--UUCGCGua-------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 93206 0.66 0.919534
Target:  5'- aGCCUcggGCuCCAGC-AGCGCca-GCGCGg -3'
miRNA:   3'- -CGGA---UGcGGUUGuUCGCGuagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 118816 0.66 0.919534
Target:  5'- cGUCUGCGCCcugggcgcGGCAcugccgcucugcGGCGCGgagggcggCGCGCc -3'
miRNA:   3'- -CGGAUGCGG--------UUGU------------UCGCGUa-------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 122817 0.66 0.919534
Target:  5'- cGCC--CGCCAGCAcccGCGCugcgGCGCGg -3'
miRNA:   3'- -CGGauGCGGUUGUu--CGCGuag-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 107757 0.66 0.919534
Target:  5'- gGCC-ACGCCccAGCGcuCGCuggCGCGCGg -3'
miRNA:   3'- -CGGaUGCGG--UUGUucGCGua-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 90737 0.66 0.919534
Target:  5'- gGCC-GCGCCug-AGGCGC-UgGCGCGg -3'
miRNA:   3'- -CGGaUGCGGuugUUCGCGuAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 67662 0.66 0.919534
Target:  5'- cGUCcGCGCgCGGCGccaGGCGCGgugaGCGCGu -3'
miRNA:   3'- -CGGaUGCG-GUUGU---UCGCGUag--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 31745 0.66 0.919534
Target:  5'- gGCCcg-GCCGucggGCAGGCGCA-CGUGUAc -3'
miRNA:   3'- -CGGaugCGGU----UGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 134093 0.66 0.919534
Target:  5'- aGCuCUcggcGCGCCGGCGcGCGC-UCGcCGCc -3'
miRNA:   3'- -CG-GA----UGCGGUUGUuCGCGuAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 42160 0.66 0.918957
Target:  5'- cGCgaACGCCGgaaGCGAGCcguggacGCAggGCGCGa -3'
miRNA:   3'- -CGgaUGCGGU---UGUUCG-------CGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 4557 0.66 0.918957
Target:  5'- gGCCUugGCUGgauccGCGGGCGgGUCcggcgggGCGCc -3'
miRNA:   3'- -CGGAugCGGU-----UGUUCGCgUAG-------CGCGu -5'
23599 3' -54.9 NC_005261.1 + 58289 0.66 0.913655
Target:  5'- gGCCggcGCGCCGGgGGGCGCGgggaggGgGCGg -3'
miRNA:   3'- -CGGa--UGCGGUUgUUCGCGUag----CgCGU- -5'
23599 3' -54.9 NC_005261.1 + 66267 0.66 0.913655
Target:  5'- cGCCguccaccggGCGCCcGCGgcugucgcAGUGCGUCagGCGCGg -3'
miRNA:   3'- -CGGa--------UGCGGuUGU--------UCGCGUAG--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 71055 0.66 0.913655
Target:  5'- cGCCgUGgGCCAGCcgccGCGCggCGgGCGg -3'
miRNA:   3'- -CGG-AUgCGGUUGuu--CGCGuaGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 79419 0.66 0.913655
Target:  5'- gGCCcgUGUCGGCGAGCuCggCGCGCGu -3'
miRNA:   3'- -CGGauGCGGUUGUUCGcGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 121784 0.66 0.913655
Target:  5'- gGCCgcgGCCGGCGGGCuggGCAgggggCGCGUg -3'
miRNA:   3'- -CGGaugCGGUUGUUCG---CGUa----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 90782 0.66 0.913655
Target:  5'- gGCCgcugcgGCgGCCGGCGcGCGCuaccgCGUGCGc -3'
miRNA:   3'- -CGGa-----UG-CGGUUGUuCGCGua---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 58024 0.66 0.913655
Target:  5'- uGCCgcgGCGgCAGCuccaggGAGCGCGgcCGCGUg -3'
miRNA:   3'- -CGGa--UGCgGUUG------UUCGCGUa-GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.