miRNA display CGI


Results 41 - 60 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 71055 0.66 0.913655
Target:  5'- cGCCgUGgGCCAGCcgccGCGCggCGgGCGg -3'
miRNA:   3'- -CGG-AUgCGGUUGuu--CGCGuaGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 79419 0.66 0.913655
Target:  5'- gGCCcgUGUCGGCGAGCuCggCGCGCGu -3'
miRNA:   3'- -CGGauGCGGUUGUUCGcGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 121784 0.66 0.913655
Target:  5'- gGCCgcgGCCGGCGGGCuggGCAgggggCGCGUg -3'
miRNA:   3'- -CGGaugCGGUUGUUCG---CGUa----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 90782 0.66 0.913655
Target:  5'- gGCCgcugcgGCgGCCGGCGcGCGCuaccgCGUGCGc -3'
miRNA:   3'- -CGGa-----UG-CGGUUGUuCGCGua---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 95325 0.66 0.913655
Target:  5'- cCCUACGuCCGgguccagaacACGGGCGUGUcCGUGCu -3'
miRNA:   3'- cGGAUGC-GGU----------UGUUCGCGUA-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 97099 0.66 0.911843
Target:  5'- gGCCggggGCGCCAGCcgggccgcggccggAGGCGCcgCG-GCc -3'
miRNA:   3'- -CGGa---UGCGGUUG--------------UUCGCGuaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 95664 0.66 0.911843
Target:  5'- cGCCgcgacggGCGCgGgugugagcacgugcACGAGCGCGaguaugCGCGCGg -3'
miRNA:   3'- -CGGa------UGCGgU--------------UGUUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 95617 0.66 0.910009
Target:  5'- uGCUggaccGCGCgGuccaggagcggcuggGCGAGCGCGaCGCGCGg -3'
miRNA:   3'- -CGGa----UGCGgU---------------UGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 126457 0.66 0.907529
Target:  5'- aGCC-GCGCCAGCGcGCucGCcUCGCGg- -3'
miRNA:   3'- -CGGaUGCGGUUGUuCG--CGuAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 56316 0.66 0.907529
Target:  5'- cGCCUGCuaCUGACGAGCcugGCG-CGCGCc -3'
miRNA:   3'- -CGGAUGc-GGUUGUUCG---CGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 93020 0.66 0.907529
Target:  5'- cGCgaGCGCCcACAAGCc---CGCGCAc -3'
miRNA:   3'- -CGgaUGCGGuUGUUCGcguaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 109208 0.66 0.907529
Target:  5'- cGCagGCGCUcgUAGGCGCGgcacgcCGCGCGc -3'
miRNA:   3'- -CGgaUGCGGuuGUUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 133837 0.66 0.907529
Target:  5'- gGCCgcgugcGCGCCGugGccGGCGCG-CGCGa- -3'
miRNA:   3'- -CGGa-----UGCGGUugU--UCGCGUaGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 18436 0.66 0.907529
Target:  5'- uCCU-CGCCGGgcAGCGCGUucccCGUGCAg -3'
miRNA:   3'- cGGAuGCGGUUguUCGCGUA----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 32546 0.66 0.907529
Target:  5'- gGCCgcgGCGCgGGCcGGCGCG-CGUGgAa -3'
miRNA:   3'- -CGGa--UGCGgUUGuUCGCGUaGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 77557 0.66 0.907529
Target:  5'- cGCCgcCGCCAgu-GGCGCcgcCGCGCc -3'
miRNA:   3'- -CGGauGCGGUuguUCGCGua-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 90222 0.66 0.907529
Target:  5'- cGCCcuCGCgCGGCGGGCGgG-CGCGCc -3'
miRNA:   3'- -CGGauGCG-GUUGUUCGCgUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 97401 0.66 0.907529
Target:  5'- cGCCUGcCGCgGGCuuGGCGgG-CGCGCc -3'
miRNA:   3'- -CGGAU-GCGgUUGu-UCGCgUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 118117 0.66 0.906274
Target:  5'- cGCUgcgcCGCCGGCucGCGCcgcucggccggcUCGCGCAg -3'
miRNA:   3'- -CGGau--GCGGUUGuuCGCGu-----------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 53709 0.66 0.901157
Target:  5'- cGCCgcGCGCCGcgGCcAGCuGCggCGCGCc -3'
miRNA:   3'- -CGGa-UGCGGU--UGuUCG-CGuaGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.