miRNA display CGI


Results 61 - 80 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 17789 0.66 0.901157
Target:  5'- aCCgcCGCCAACAucuCGCcggucUCGCGCAu -3'
miRNA:   3'- cGGauGCGGUUGUuc-GCGu----AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 135205 0.66 0.901157
Target:  5'- gGCCgagGCggcgcagaggGCCAcggcCGAGCGCGUCGcCGCc -3'
miRNA:   3'- -CGGa--UG----------CGGUu---GUUCGCGUAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 109178 0.66 0.901157
Target:  5'- uUCUcCGCUAGCAGcGcCGCGUCGgGCGu -3'
miRNA:   3'- cGGAuGCGGUUGUU-C-GCGUAGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 107010 0.66 0.901157
Target:  5'- cGCCgaGCGCCAcgugcccaaggaGCAgGGCGCGccaCGCGCc -3'
miRNA:   3'- -CGGa-UGCGGU------------UGU-UCGCGUa--GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 99009 0.66 0.901157
Target:  5'- aGCgU-CGCgAGCGgcGGCGCGgcggCGCGCGc -3'
miRNA:   3'- -CGgAuGCGgUUGU--UCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 44423 0.66 0.901157
Target:  5'- cGCgUACGCCGACGacguggAGCGgCucUCGCGg- -3'
miRNA:   3'- -CGgAUGCGGUUGU------UCGC-Gu-AGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 50401 0.66 0.901157
Target:  5'- cGCgaAgGCCGGCAGcccCGCGUCGCGgAg -3'
miRNA:   3'- -CGgaUgCGGUUGUUc--GCGUAGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 62135 0.66 0.901157
Target:  5'- cCCUGCGUCAGCAGGUuggGgAUCaGCGaCAg -3'
miRNA:   3'- cGGAUGCGGUUGUUCG---CgUAG-CGC-GU- -5'
23599 3' -54.9 NC_005261.1 + 64424 0.66 0.901157
Target:  5'- nGUCcacCGCC-ACGcGCGCGUUGUGCAg -3'
miRNA:   3'- -CGGau-GCGGuUGUuCGCGUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 103474 0.66 0.901157
Target:  5'- cGCCaggGCGuCCAGCuGGCGCAagacgucgUCgGCGCc -3'
miRNA:   3'- -CGGa--UGC-GGUUGuUCGCGU--------AG-CGCGu -5'
23599 3' -54.9 NC_005261.1 + 108151 0.66 0.901157
Target:  5'- aGCCcacCGCCuGC-AGCGCGUccgccagggCGCGCGg -3'
miRNA:   3'- -CGGau-GCGGuUGuUCGCGUA---------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 111457 0.66 0.901157
Target:  5'- aGCCggGCGCCGGCGAG-GCcaaaaggCGgGCGg -3'
miRNA:   3'- -CGGa-UGCGGUUGUUCgCGua-----GCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 53709 0.66 0.901157
Target:  5'- cGCCgcGCGCCGcgGCcAGCuGCggCGCGCc -3'
miRNA:   3'- -CGGa-UGCGGU--UGuUCG-CGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 131884 0.66 0.901157
Target:  5'- gGCCgcCGCC-GCAcGCGaCggCGCGCAc -3'
miRNA:   3'- -CGGauGCGGuUGUuCGC-GuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 18341 0.66 0.900507
Target:  5'- gGCCgggGCGCagcACGAGCGaCGUCccgcuaaGCGCGu -3'
miRNA:   3'- -CGGa--UGCGgu-UGUUCGC-GUAG-------CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 70373 0.66 0.900507
Target:  5'- cGCCUccacgGCGCCGcuggccgacacgcACGAcGCGC--CGCGCAc -3'
miRNA:   3'- -CGGA-----UGCGGU-------------UGUU-CGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 85392 0.66 0.900507
Target:  5'- gGCUUcugguagGCGCCcGCGAGCccgaGCAcgCGCGCGc -3'
miRNA:   3'- -CGGA-------UGCGGuUGUUCG----CGUa-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 11940 0.66 0.899199
Target:  5'- gGCCcGCGCCGcggcggcucgcccgGCGcGCGCuccaGCGCAg -3'
miRNA:   3'- -CGGaUGCGGU--------------UGUuCGCGuag-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 67964 0.67 0.897218
Target:  5'- gGCCgccGCGgCGAUGgaguucgcuuaccgcAGCGuCGUCGCGCAc -3'
miRNA:   3'- -CGGa--UGCgGUUGU---------------UCGC-GUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 101221 0.67 0.894544
Target:  5'- cGCCgcagcGCGUCGAgguGGCGCcucagcUCGCGCAg -3'
miRNA:   3'- -CGGa----UGCGGUUgu-UCGCGu-----AGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.