miRNA display CGI


Results 81 - 100 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 78847 0.67 0.894544
Target:  5'- cGCCggcgGCGCCcGCcgccgGAGCGCGagcCGCGUc -3'
miRNA:   3'- -CGGa---UGCGGuUG-----UUCGCGUa--GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 74591 0.67 0.894544
Target:  5'- cGUCUucgUGCCgGACGAGCGgaacuuCAUCGCGCc -3'
miRNA:   3'- -CGGAu--GCGG-UUGUUCGC------GUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 59144 0.67 0.894544
Target:  5'- gGCCggcGCGCCc-CGGGCGCGcgGCGCc -3'
miRNA:   3'- -CGGa--UGCGGuuGUUCGCGUagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 37759 0.67 0.894544
Target:  5'- cGCC-GCGCCGccCAAGCGCcg-GCGCc -3'
miRNA:   3'- -CGGaUGCGGUu-GUUCGCGuagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 37230 0.67 0.894544
Target:  5'- gGCUUGCG-CGGCGcGGCGCGUggacaGCGCGg -3'
miRNA:   3'- -CGGAUGCgGUUGU-UCGCGUAg----CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 32362 0.67 0.894544
Target:  5'- gGCCcgcgggagACGCUgguGCAGGCGCggCGCgGCGg -3'
miRNA:   3'- -CGGa-------UGCGGu--UGUUCGCGuaGCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 29955 0.67 0.894544
Target:  5'- uGCCgcgagGCGCUAGaggcGGCGCggUGCGCc -3'
miRNA:   3'- -CGGa----UGCGGUUgu--UCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 3434 0.67 0.894544
Target:  5'- gGCCaGCGuCCAgGCGGGCGCG-CGgGCc -3'
miRNA:   3'- -CGGaUGC-GGU-UGUUCGCGUaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 98209 0.67 0.894544
Target:  5'- aGCggGCGCCGccACGgcAGCGCggCGgGCAu -3'
miRNA:   3'- -CGgaUGCGGU--UGU--UCGCGuaGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 101461 0.67 0.894544
Target:  5'- gGCCccagcgcCGCCGGCGgcGGCGUgaUGCGCAg -3'
miRNA:   3'- -CGGau-----GCGGUUGU--UCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 112330 0.67 0.894544
Target:  5'- gGCCUcGCGCgAcuGCAAGCgggGCAUCauggGCGCGc -3'
miRNA:   3'- -CGGA-UGCGgU--UGUUCG---CGUAG----CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 110507 0.67 0.894544
Target:  5'- gGCCaGCGUCAcggccgucgucuGCgGGGCGCAggagggCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGU------------UG-UUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 101221 0.67 0.894544
Target:  5'- cGCCgcagcGCGUCGAgguGGCGCcucagcUCGCGCAg -3'
miRNA:   3'- -CGGa----UGCGGUUgu-UCGCGu-----AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 99329 0.67 0.894544
Target:  5'- gGCCacgACGaCCGGCGcgcccAGCaGCAgCGCGCAc -3'
miRNA:   3'- -CGGa--UGC-GGUUGU-----UCG-CGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 88060 0.67 0.894544
Target:  5'- cGCCUGCGCCGGcCGAGC-CAUgaacccagacUGCGa- -3'
miRNA:   3'- -CGGAUGCGGUU-GUUCGcGUA----------GCGCgu -5'
23599 3' -54.9 NC_005261.1 + 57762 0.67 0.894544
Target:  5'- cGCCcgGCGCgaucuggaAGCAGuccGCgGCGUCGCGCGg -3'
miRNA:   3'- -CGGa-UGCGg-------UUGUU---CG-CGUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 31791 0.67 0.894544
Target:  5'- uGCCcGCGgC-GCAGuGCGCcgCGCGCu -3'
miRNA:   3'- -CGGaUGCgGuUGUU-CGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 122264 0.67 0.894544
Target:  5'- cGCCgcCGCCGuCAGGgccguuaGCAUCaGCGCGg -3'
miRNA:   3'- -CGGauGCGGUuGUUCg------CGUAG-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 120216 0.67 0.894544
Target:  5'- uCCUgguuccagaGCGCCGACGuggAGCGCcgcuUCGcCGCGg -3'
miRNA:   3'- cGGA---------UGCGGUUGU---UCGCGu---AGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 118771 0.67 0.894544
Target:  5'- cGCgcGCGCCGACGcugcagacGGCGCGcugaUgGCGCAc -3'
miRNA:   3'- -CGgaUGCGGUUGU--------UCGCGU----AgCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.