miRNA display CGI


Results 101 - 120 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 118659 0.67 0.89387
Target:  5'- gGCCgcGCGCUcggggcugagggcGGCGGGCGC-UgGCGCAc -3'
miRNA:   3'- -CGGa-UGCGG-------------UUGUUCGCGuAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 96581 0.67 0.89387
Target:  5'- cGCCgugACcCCGGC-GGCGCucugccgcagcacGUCGCGCGu -3'
miRNA:   3'- -CGGa--UGcGGUUGuUCGCG-------------UAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 100582 0.67 0.893193
Target:  5'- cGCCUcguCGCCcAgGAGCGCcgccacgcggcCGCGCAg -3'
miRNA:   3'- -CGGAu--GCGGuUgUUCGCGua---------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 108703 0.67 0.891832
Target:  5'- -aCU-CGUCGACGAGCGCcacggcgaagagCGCGCGg -3'
miRNA:   3'- cgGAuGCGGUUGUUCGCGua----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 17001 0.67 0.890462
Target:  5'- aUCaGCGCCAGCAugucgcacgcggccGCGCucGUCGCGUAg -3'
miRNA:   3'- cGGaUGCGGUUGUu-------------CGCG--UAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 14987 0.67 0.887693
Target:  5'- gGCC-GCGCCGGCc-GCGCccggaGCGCGg -3'
miRNA:   3'- -CGGaUGCGGUUGuuCGCGuag--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 14760 0.67 0.887693
Target:  5'- cGCC-GCGCCGcgACAGGggggcCGCccCGCGCAg -3'
miRNA:   3'- -CGGaUGCGGU--UGUUC-----GCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 12295 0.67 0.887693
Target:  5'- cGCgUcCGCCGcgggcACGGGCGCGUagccggcgggCGCGCGc -3'
miRNA:   3'- -CGgAuGCGGU-----UGUUCGCGUA----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 62943 0.67 0.887693
Target:  5'- aGCCccGCaCCGGCGAG-GCGUCGCGgAu -3'
miRNA:   3'- -CGGa-UGcGGUUGUUCgCGUAGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 106773 0.67 0.887693
Target:  5'- uGCCgGCgGCCAGCccAGCGCcGUCuGCGCc -3'
miRNA:   3'- -CGGaUG-CGGUUGu-UCGCG-UAG-CGCGu -5'
23599 3' -54.9 NC_005261.1 + 43012 0.67 0.887693
Target:  5'- gGCCaggGCGUguAC-AGCGCcgUGCGCu -3'
miRNA:   3'- -CGGa--UGCGguUGuUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 48643 0.67 0.887693
Target:  5'- cCCUGCGCCGGCccccgcccgGAGaGCcgCGCgGCAa -3'
miRNA:   3'- cGGAUGCGGUUG---------UUCgCGuaGCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 68150 0.67 0.887693
Target:  5'- cGCCgugGCCGGCuacacgcGCGCGgagcUCGCGCGc -3'
miRNA:   3'- -CGGaugCGGUUGuu-----CGCGU----AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 75474 0.67 0.887693
Target:  5'- cGCCgggcggcgGCGCgGgccgcuACGAGCGCGggGCGCu -3'
miRNA:   3'- -CGGa-------UGCGgU------UGUUCGCGUagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 75652 0.67 0.887693
Target:  5'- gGCCgGCGCguuccuGGCGCG-CGCGCAg -3'
miRNA:   3'- -CGGaUGCGguugu-UCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 79038 0.67 0.887693
Target:  5'- cGCCcGCGCCcuuGGCGucguccuugAGCGCG-CGCGUg -3'
miRNA:   3'- -CGGaUGCGG---UUGU---------UCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 117511 0.67 0.887693
Target:  5'- cGCCgGCGCCGccacgAUGAGCGUGUCcacCGCGg -3'
miRNA:   3'- -CGGaUGCGGU-----UGUUCGCGUAGc--GCGU- -5'
23599 3' -54.9 NC_005261.1 + 96352 0.67 0.887693
Target:  5'- aCCUgACGCCcuGACuggccuGGCGCGgcCGCGCGa -3'
miRNA:   3'- cGGA-UGCGG--UUGu-----UCGCGUa-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 64676 0.67 0.885591
Target:  5'- cGCCguggUGCGgCAcCGGGCGCGUcccggggccgccgcCGCGCAc -3'
miRNA:   3'- -CGG----AUGCgGUuGUUCGCGUA--------------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 67369 0.67 0.880606
Target:  5'- cGCCggcaGCGCCAccgccGCGAagacCGCcgCGCGCGc -3'
miRNA:   3'- -CGGa---UGCGGU-----UGUUc---GCGuaGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.