miRNA display CGI


Results 1 - 20 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 116 0.7 0.730665
Target:  5'- cGCCcGCGCCGGCGccgccccuGGUGC-UCGCGgGg -3'
miRNA:   3'- -CGGaUGCGGUUGU--------UCGCGuAGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 1462 0.7 0.730665
Target:  5'- gGCgUGCGgcuCCAGC-AGCGCGgcCGCGCAg -3'
miRNA:   3'- -CGgAUGC---GGUUGuUCGCGUa-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 1518 0.68 0.83346
Target:  5'- cGUCggGCGCCAGCuccAGCGCG-CGcCGCc -3'
miRNA:   3'- -CGGa-UGCGGUUGu--UCGCGUaGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 1691 0.68 0.816143
Target:  5'- aGCC-GCGgCAGCAcGCGCugccgguacUCGCGCGg -3'
miRNA:   3'- -CGGaUGCgGUUGUuCGCGu--------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 1874 0.74 0.504677
Target:  5'- cGCCgcgAgGCCAGCAcGGCGCGcgccagCGCGCGc -3'
miRNA:   3'- -CGGa--UgCGGUUGU-UCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 1929 0.74 0.524592
Target:  5'- cGCaCUGCGCC-GCGGGCaGCAccgcggCGCGCAg -3'
miRNA:   3'- -CG-GAUGCGGuUGUUCG-CGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 2207 0.69 0.788885
Target:  5'- uGCCcaGCGCCGcgaGCAGGUGCGagagcccgcCGCGCAc -3'
miRNA:   3'- -CGGa-UGCGGU---UGUUCGCGUa--------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 2380 0.66 0.925165
Target:  5'- cGCCgcagcgGCGCgcuggCGGCGAGCGCGcccgcgggcccCGCGCGg -3'
miRNA:   3'- -CGGa-----UGCG-----GUUGUUCGCGUa----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 2445 0.67 0.865748
Target:  5'- gGCCaGCGCCucggggucgaaGGCGAGCGCcggGCGCc -3'
miRNA:   3'- -CGGaUGCGG-----------UUGUUCGCGuagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 2544 0.69 0.79813
Target:  5'- cGCCaGCGCCGcgGCGcugGGCGCGggCGUGUg -3'
miRNA:   3'- -CGGaUGCGGU--UGU---UCGCGUa-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 2740 0.76 0.384773
Target:  5'- cGCUUGCGCCGcgGCGGGC-CGUCGCgGCGg -3'
miRNA:   3'- -CGGAUGCGGU--UGUUCGcGUAGCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 3352 0.67 0.857988
Target:  5'- cGCCcggcGCGCCGgccuucagggccGCGAGCGCGgccgccagcCGCGCc -3'
miRNA:   3'- -CGGa---UGCGGU------------UGUUCGCGUa--------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 3434 0.67 0.894544
Target:  5'- gGCCaGCGuCCAgGCGGGCGCG-CGgGCc -3'
miRNA:   3'- -CGGaUGC-GGU-UGUUCGCGUaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 3481 0.69 0.760307
Target:  5'- aCC-GCGCCAGCGGGgccaCGguUCGCGCc -3'
miRNA:   3'- cGGaUGCGGUUGUUC----GCguAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 3539 0.7 0.738658
Target:  5'- cGCCUcgGCGCgCAGCGcggcgGGCGCGgcgccgcuaaggCGCGCGc -3'
miRNA:   3'- -CGGA--UGCG-GUUGU-----UCGCGUa-----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 3636 0.69 0.760307
Target:  5'- cGCUccgggUGCGCC-GCuAGCGCGUCuggaGCGCAg -3'
miRNA:   3'- -CGG-----AUGCGGuUGuUCGCGUAG----CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 3671 0.67 0.857988
Target:  5'- gGCCgcgGCCGGCAGGCcGCGgccCGCuGCAg -3'
miRNA:   3'- -CGGaugCGGUUGUUCG-CGUa--GCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 3733 0.77 0.343933
Target:  5'- uGCCggacGCGCCGGC-GGCGCAcCGCGCc -3'
miRNA:   3'- -CGGa---UGCGGUUGuUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 3761 0.72 0.626501
Target:  5'- cGCCUcuaGCGCCucgcGGCAggccgcAGCGCAgcgguccgccagcUCGCGCAg -3'
miRNA:   3'- -CGGA---UGCGG----UUGU------UCGCGU-------------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 3863 0.72 0.627545
Target:  5'- cGCCgcGCgGCCGGCGAGCaCggCGCGCAg -3'
miRNA:   3'- -CGGa-UG-CGGUUGUUCGcGuaGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.