miRNA display CGI


Results 41 - 60 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 15806 0.71 0.70432
Target:  5'- gGCCaGCGCCGccacccagaagagcaACAGGCaccGCAUCGCGa- -3'
miRNA:   3'- -CGGaUGCGGU---------------UGUUCG---CGUAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 16061 0.66 0.913655
Target:  5'- gGCCcGCGCCgAGCcGGCGCGUguagacgaaguaCGCgGCGg -3'
miRNA:   3'- -CGGaUGCGG-UUGuUCGCGUA------------GCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 17001 0.67 0.890462
Target:  5'- aUCaGCGCCAGCAugucgcacgcggccGCGCucGUCGCGUAg -3'
miRNA:   3'- cGGaUGCGGUUGUu-------------CGCG--UAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 17789 0.66 0.901157
Target:  5'- aCCgcCGCCAACAucuCGCcggucUCGCGCAu -3'
miRNA:   3'- cGGauGCGGUUGUuc-GCGu----AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 18341 0.66 0.900507
Target:  5'- gGCCgggGCGCagcACGAGCGaCGUCccgcuaaGCGCGu -3'
miRNA:   3'- -CGGa--UGCGgu-UGUUCGC-GUAG-------CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 18436 0.66 0.907529
Target:  5'- uCCU-CGCCGGgcAGCGCGUucccCGUGCAg -3'
miRNA:   3'- cGGAuGCGGUUguUCGCGUA----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 18521 0.66 0.925165
Target:  5'- aGCCcGCGUCAAUGacGGCGgCGUCcCGCGg -3'
miRNA:   3'- -CGGaUGCGGUUGU--UCGC-GUAGcGCGU- -5'
23599 3' -54.9 NC_005261.1 + 19549 0.7 0.740648
Target:  5'- cGCCaGCGCCGugGggAGCGCcagCGgGCGg -3'
miRNA:   3'- -CGGaUGCGGUugU--UCGCGua-GCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 19874 0.66 0.925165
Target:  5'- aCCc-CGCCGGCGGGCcCGUCGuCGCc -3'
miRNA:   3'- cGGauGCGGUUGUUCGcGUAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 20230 0.67 0.865748
Target:  5'- uGCCUG-GCCAGCcgcucCGCcgCGCGCu -3'
miRNA:   3'- -CGGAUgCGGUUGuuc--GCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 20596 0.72 0.617107
Target:  5'- gGCCUACGUCGACAcAGCGCcccuggCcCGCAu -3'
miRNA:   3'- -CGGAUGCGGUUGU-UCGCGua----GcGCGU- -5'
23599 3' -54.9 NC_005261.1 + 20813 0.66 0.925165
Target:  5'- cGCCUgguuuACGCgCAGCugaacuGCGCGUuCGCGgGg -3'
miRNA:   3'- -CGGA-----UGCG-GUUGuu----CGCGUA-GCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 21667 0.67 0.880606
Target:  5'- cGCCggUACGugcuCCGGCuggggcucGAGCGCGUCGCGg- -3'
miRNA:   3'- -CGG--AUGC----GGUUG--------UUCGCGUAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 21757 0.69 0.759334
Target:  5'- cGCCUggagcgcGCGCCgGGCGAGcCGCcgCgGCGCGg -3'
miRNA:   3'- -CGGA-------UGCGG-UUGUUC-GCGuaG-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 21815 0.68 0.850015
Target:  5'- gGCCgg-GCCcgcGGCGGGCGCG-CGUGCGg -3'
miRNA:   3'- -CGGaugCGG---UUGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 22732 0.69 0.769964
Target:  5'- aCCaGCGCCAGuCGGGCGCGggGCgGCGg -3'
miRNA:   3'- cGGaUGCGGUU-GUUCGCGUagCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 23179 0.73 0.56525
Target:  5'- cGCCggggGCGaCAGCGAGCGCGcCGCGgGg -3'
miRNA:   3'- -CGGa---UGCgGUUGUUCGCGUaGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 23316 0.73 0.559092
Target:  5'- gGCCgagcagaaagaaGCCGACGAGCGCGcgGCGCAg -3'
miRNA:   3'- -CGGaug---------CGGUUGUUCGCGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 23471 0.68 0.841836
Target:  5'- gGCCcGCGgCGGCGAGUGCG-CGgGCc -3'
miRNA:   3'- -CGGaUGCgGUUGUUCGCGUaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 28586 0.71 0.679617
Target:  5'- cGCgaGCGCCGGCGGGCcGCc-CGCGCc -3'
miRNA:   3'- -CGgaUGCGGUUGUUCG-CGuaGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.