miRNA display CGI


Results 61 - 80 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 28774 0.75 0.428696
Target:  5'- cGCCUGgGCCGcggcGCGGGCGC-UCGCGg- -3'
miRNA:   3'- -CGGAUgCGGU----UGUUCGCGuAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 29125 0.67 0.880606
Target:  5'- aGCCcugGCGCCGGgGGGCGCccCGC-CGg -3'
miRNA:   3'- -CGGa--UGCGGUUgUUCGCGuaGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 29195 0.72 0.596275
Target:  5'- cGCCgcgGCGCCcgcGCGGGCGCGcgacuggggccCGCGCAg -3'
miRNA:   3'- -CGGa--UGCGGu--UGUUCGCGUa----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 29235 0.67 0.873289
Target:  5'- aGgCUACGCCGc--GGCGCcgCGCGaCGg -3'
miRNA:   3'- -CgGAUGCGGUuguUCGCGuaGCGC-GU- -5'
23599 3' -54.9 NC_005261.1 + 29509 0.69 0.788885
Target:  5'- cGCCgcgACGCCAugGccuGGCuGCAgaGCGCGa -3'
miRNA:   3'- -CGGa--UGCGGUugU---UCG-CGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 29648 0.7 0.730665
Target:  5'- cGCCggucggggACGCCAugGccGCGCAgaaCGCGCu -3'
miRNA:   3'- -CGGa-------UGCGGUugUu-CGCGUa--GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 29756 0.68 0.841836
Target:  5'- uCCUGCagaGCCuGCGGcGCGCGUaCGCGCc -3'
miRNA:   3'- cGGAUG---CGGuUGUU-CGCGUA-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 29802 0.74 0.494843
Target:  5'- gGCCgGCGCCGGC-GGCGCGggcgccCGCGCc -3'
miRNA:   3'- -CGGaUGCGGUUGuUCGCGUa-----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 29863 0.68 0.839344
Target:  5'- gGCCgcgcgGCGCCGGCGccgcugccgccAGCGCccgggcccgcggcagCGCGCGa -3'
miRNA:   3'- -CGGa----UGCGGUUGU-----------UCGCGua-------------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 29955 0.67 0.894544
Target:  5'- uGCCgcgagGCGCUAGaggcGGCGCggUGCGCc -3'
miRNA:   3'- -CGGa----UGCGGUUgu--UCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 29987 0.66 0.901157
Target:  5'- cGCCggcGCGuCCGGCAgcGGCGCGUCugaGCu -3'
miRNA:   3'- -CGGa--UGC-GGUUGU--UCGCGUAGcg-CGu -5'
23599 3' -54.9 NC_005261.1 + 30062 0.7 0.719582
Target:  5'- gGCCUGCGCUccaGACGcgcuagcGGCGCAcccggaGCGCGu -3'
miRNA:   3'- -CGGAUGCGG---UUGU-------UCGCGUag----CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 30131 0.73 0.534661
Target:  5'- gGCCcgcgACGCgGugGAGCGCG-CGCGCc -3'
miRNA:   3'- -CGGa---UGCGgUugUUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 30368 0.68 0.850015
Target:  5'- gGCCggcGCGCCG---GGCGCcgCgGCGCGg -3'
miRNA:   3'- -CGGa--UGCGGUuguUCGCGuaG-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 31016 0.67 0.880606
Target:  5'- gGCCcgGCGCCGGCcaaAAGC-CggCGCGCc -3'
miRNA:   3'- -CGGa-UGCGGUUG---UUCGcGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 31307 0.68 0.83346
Target:  5'- cGCCgcgcgGgGCCcGCGGGCGCGcUCGcCGCc -3'
miRNA:   3'- -CGGa----UgCGGuUGUUCGCGU-AGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 31558 0.7 0.720594
Target:  5'- cGCCUGgGCCGgguccuggACGGGCGCGccggacgugagCGCGCu -3'
miRNA:   3'- -CGGAUgCGGU--------UGUUCGCGUa----------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 31745 0.66 0.919534
Target:  5'- gGCCcg-GCCGucggGCAGGCGCA-CGUGUAc -3'
miRNA:   3'- -CGGaugCGGU----UGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 31791 0.67 0.894544
Target:  5'- uGCCcGCGgC-GCAGuGCGCcgCGCGCu -3'
miRNA:   3'- -CGGaUGCgGuUGUU-CGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 31942 0.71 0.66301
Target:  5'- uGCCgcgGCGCCAACGuGCGCuacacgguggccaCGCGCc -3'
miRNA:   3'- -CGGa--UGCGGUUGUuCGCGua-----------GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.