miRNA display CGI


Results 81 - 100 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 32036 0.68 0.850015
Target:  5'- uGCCgcgGCuCGACGGGCGCAaggacauggcCGCGCAg -3'
miRNA:   3'- -CGGaugCG-GUUGUUCGCGUa---------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 32362 0.67 0.894544
Target:  5'- gGCCcgcgggagACGCUgguGCAGGCGCggCGCgGCGg -3'
miRNA:   3'- -CGGa-------UGCGGu--UGUUCGCGuaGCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 32546 0.66 0.907529
Target:  5'- gGCCgcgGCGCgGGCcGGCGCG-CGUGgAa -3'
miRNA:   3'- -CGGa--UGCGgUUGuUCGCGUaGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 34018 0.67 0.865748
Target:  5'- uGCCUcgACGUgAucACcGGCGCggCGCGCGc -3'
miRNA:   3'- -CGGA--UGCGgU--UGuUCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 34362 0.77 0.351846
Target:  5'- gGCCggGCGCC-GCGcGGCGCcgCGCGCAg -3'
miRNA:   3'- -CGGa-UGCGGuUGU-UCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 35448 0.66 0.925165
Target:  5'- cGCCc-CGCgGGucUAGGCGCggCGCGCGc -3'
miRNA:   3'- -CGGauGCGgUU--GUUCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 35775 0.68 0.816143
Target:  5'- gGCCgagacaggAgGCCcGCGGGCGCcAUgGCGCGg -3'
miRNA:   3'- -CGGa-------UgCGGuUGUUCGCG-UAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 36172 0.73 0.585896
Target:  5'- gGCUUuuaugcCGCCGGC-AGCGCAUgCGCGCu -3'
miRNA:   3'- -CGGAu-----GCGGUUGuUCGCGUA-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 36616 0.69 0.769004
Target:  5'- uCCUGCGCCccGGCGcacaaacGGCGCGaagccggCGCGCGg -3'
miRNA:   3'- cGGAUGCGG--UUGU-------UCGCGUa------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 36769 0.73 0.585896
Target:  5'- cCCUgcACGCCGGCccGUGCGUUGCGCc -3'
miRNA:   3'- cGGA--UGCGGUUGuuCGCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 36801 0.68 0.850015
Target:  5'- cUUUGCGCCGGCcGGCGCuaCGUGCc -3'
miRNA:   3'- cGGAUGCGGUUGuUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 36943 0.68 0.83346
Target:  5'- cCCUGCGCUGGCGcaaGGCcCGcCGCGCGg -3'
miRNA:   3'- cGGAUGCGGUUGU---UCGcGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 37230 0.67 0.894544
Target:  5'- gGCUUGCG-CGGCGcGGCGCGUggacaGCGCGg -3'
miRNA:   3'- -CGGAUGCgGUUGU-UCGCGUAg----CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 37426 0.69 0.760307
Target:  5'- cCCUACGCCGugGcGCGCGggcUCGC-CGa -3'
miRNA:   3'- cGGAUGCGGUugUuCGCGU---AGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 37759 0.67 0.894544
Target:  5'- cGCC-GCGCCGccCAAGCGCcg-GCGCc -3'
miRNA:   3'- -CGGaUGCGGUu-GUUCGCGuagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 38488 0.66 0.919534
Target:  5'- gGCCgcggcgGCGUCGACugGAGCGUcguauaaggCGCGCGc -3'
miRNA:   3'- -CGGa-----UGCGGUUG--UUCGCGua-------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 38531 0.69 0.79813
Target:  5'- gGCUgcgcGCGCCgGGCAcAGCGCcggCGCGCGg -3'
miRNA:   3'- -CGGa---UGCGG-UUGU-UCGCGua-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 38923 0.7 0.749547
Target:  5'- gGCCcgcGCGCCAagccggcggccggGCGGGcCGCggCGCGCGg -3'
miRNA:   3'- -CGGa--UGCGGU-------------UGUUC-GCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 38983 0.69 0.810809
Target:  5'- aGCCUGCagauguuucugcuguGCCAGC--GCGCccaCGCGCAg -3'
miRNA:   3'- -CGGAUG---------------CGGUUGuuCGCGua-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 39534 0.7 0.720594
Target:  5'- cGCCUcuacgcggcCGCCAGCcccGCGCG-CGCGCGg -3'
miRNA:   3'- -CGGAu--------GCGGUUGuu-CGCGUaGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.