miRNA display CGI


Results 101 - 120 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 39591 0.69 0.807219
Target:  5'- cCCaGCGCCG---AGCGCcgCGCGCc -3'
miRNA:   3'- cGGaUGCGGUuguUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 39865 0.72 0.637986
Target:  5'- cGCCcagGCacacgGCCAGCAGGcCGCG-CGCGCGg -3'
miRNA:   3'- -CGGa--UG-----CGGUUGUUC-GCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 41278 0.72 0.596275
Target:  5'- cGCuCUGCGCCcuGACGAaccCGuCGUCGCGCAg -3'
miRNA:   3'- -CG-GAUGCGG--UUGUUc--GC-GUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 42160 0.66 0.918957
Target:  5'- cGCgaACGCCGgaaGCGAGCcguggacGCAggGCGCGa -3'
miRNA:   3'- -CGgaUGCGGU---UGUUCG-------CGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 42210 0.71 0.658846
Target:  5'- cGCCgcgcggGCGCCccgccGCGAGCuccGCcgCGCGCAg -3'
miRNA:   3'- -CGGa-----UGCGGu----UGUUCG---CGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 42396 0.67 0.873289
Target:  5'- -gCUGCGCCuGCAcGUGguUgGCGCGg -3'
miRNA:   3'- cgGAUGCGGuUGUuCGCguAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 42491 0.71 0.648423
Target:  5'- uUUUGCG-CGGCGAcGCGCGUCGCGCc -3'
miRNA:   3'- cGGAUGCgGUUGUU-CGCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 42839 0.7 0.730665
Target:  5'- aCCUGgGCgAuggcagaguGCGAGCGCGUCGUGUc -3'
miRNA:   3'- cGGAUgCGgU---------UGUUCGCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 43012 0.67 0.887693
Target:  5'- gGCCaggGCGUguAC-AGCGCcgUGCGCu -3'
miRNA:   3'- -CGGa--UGCGguUGuUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 43150 0.67 0.857988
Target:  5'- gGCCUGCgcgccGCCGACAucgcGGCGCGauacgGCGCc -3'
miRNA:   3'- -CGGAUG-----CGGUUGU----UCGCGUag---CGCGu -5'
23599 3' -54.9 NC_005261.1 + 43587 0.7 0.744613
Target:  5'- cGCCgugcgcgACGCCGucuccggcgaggaggGCGAGUGCuUCGUGCu -3'
miRNA:   3'- -CGGa------UGCGGU---------------UGUUCGCGuAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 44188 0.73 0.534661
Target:  5'- aGCUccGCGCCAGCGAGCGCga-GCuGCAg -3'
miRNA:   3'- -CGGa-UGCGGUUGUUCGCGuagCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 44423 0.66 0.901157
Target:  5'- cGCgUACGCCGACGacguggAGCGgCucUCGCGg- -3'
miRNA:   3'- -CGgAUGCGGUUGU------UCGC-Gu-AGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 44859 0.66 0.925165
Target:  5'- aGCCgcgaggaagaGCGCCGccGCGAGCGCcgCGgGgAu -3'
miRNA:   3'- -CGGa---------UGCGGU--UGUUCGCGuaGCgCgU- -5'
23599 3' -54.9 NC_005261.1 + 45102 0.68 0.824892
Target:  5'- cGCCUGCG-CGugGAGCcggGCAcgggCGCGCu -3'
miRNA:   3'- -CGGAUGCgGUugUUCG---CGUa---GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 45150 0.66 0.925165
Target:  5'- gGCC-GCGCCGaggaagugaccuGCGAcGCGUAcCGCGCc -3'
miRNA:   3'- -CGGaUGCGGU------------UGUU-CGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 45423 0.72 0.617107
Target:  5'- cGCCUGCGCCcGCc-GC-CcgCGCGCAa -3'
miRNA:   3'- -CGGAUGCGGuUGuuCGcGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 45640 0.68 0.83346
Target:  5'- gGCCcGCGCCGgagcagugcccaGCGGGCGUgaucaaCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGU------------UGUUCGCGua----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 46167 0.8 0.240694
Target:  5'- cGCCccaguCGCCGAUggGCGCAgUCGCGCu -3'
miRNA:   3'- -CGGau---GCGGUUGuuCGCGU-AGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 46228 0.77 0.351846
Target:  5'- gGCC-GCGUgGACGAGCGCGUCGCa-- -3'
miRNA:   3'- -CGGaUGCGgUUGUUCGCGUAGCGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.