miRNA display CGI


Results 1 - 20 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 137799 0.7 0.730665
Target:  5'- cGCCcGCGCCGGCGccgccccuGGUGC-UCGCGgGg -3'
miRNA:   3'- -CGGaUGCGGUUGU--------UCGCGuAGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 137050 0.68 0.850015
Target:  5'- gGCggAcCGUCGGCAGGCGCGgagGCGCGg -3'
miRNA:   3'- -CGgaU-GCGGUUGUUCGCGUag-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 136597 0.67 0.865748
Target:  5'- cGCCcgGCG-CAGCGuggagcGGCGCG-CGCGCGc -3'
miRNA:   3'- -CGGa-UGCgGUUGU------UCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 135508 0.71 0.689946
Target:  5'- gGCCUcaGCCGACGAGUGCcugacGUgGUGCAa -3'
miRNA:   3'- -CGGAugCGGUUGUUCGCG-----UAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 135205 0.66 0.901157
Target:  5'- gGCCgagGCggcgcagaggGCCAcggcCGAGCGCGUCGcCGCc -3'
miRNA:   3'- -CGGa--UG----------CGGUu---GUUCGCGUAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 134518 0.77 0.359888
Target:  5'- aGCCUGCGCCuGCAGcUGCugggCGCGCAg -3'
miRNA:   3'- -CGGAUGCGGuUGUUcGCGua--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 134468 0.68 0.841836
Target:  5'- aCCUGgcCGCCAuCGugggcGGCGuCGUCGCGCu -3'
miRNA:   3'- cGGAU--GCGGUuGU-----UCGC-GUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 134226 0.72 0.596275
Target:  5'- gGCCggcaGCGUCGGCGuGGCGCA-CGCGCc -3'
miRNA:   3'- -CGGa---UGCGGUUGU-UCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 134093 0.66 0.919534
Target:  5'- aGCuCUcggcGCGCCGGCGcGCGC-UCGcCGCc -3'
miRNA:   3'- -CG-GA----UGCGGUUGUuCGCGuAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 133943 0.72 0.637986
Target:  5'- aCCUGCGCCA---GGCGCG--GCGCAu -3'
miRNA:   3'- cGGAUGCGGUuguUCGCGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 133837 0.66 0.907529
Target:  5'- gGCCgcgugcGCGCCGugGccGGCGCG-CGCGa- -3'
miRNA:   3'- -CGGa-----UGCGGUugU--UCGCGUaGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 133774 0.69 0.788885
Target:  5'- uGCCUccACGCCcuCGugcGGCGCAUCcCGCc -3'
miRNA:   3'- -CGGA--UGCGGuuGU---UCGCGUAGcGCGu -5'
23599 3' -54.9 NC_005261.1 + 133723 0.68 0.840177
Target:  5'- cGUCUACGUCGGgGcGGCGCGgacaacgccacgCGCGCGa -3'
miRNA:   3'- -CGGAUGCGGUUgU-UCGCGUa-----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 133642 0.71 0.658846
Target:  5'- cGCC-GCGCCGcugcGCGAGCGCugCGUGCu -3'
miRNA:   3'- -CGGaUGCGGU----UGUUCGCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 133378 0.67 0.880606
Target:  5'- uGCCUGCGCgCGgcccACGGGCGCG-CG-GCc -3'
miRNA:   3'- -CGGAUGCG-GU----UGUUCGCGUaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 133331 0.68 0.850015
Target:  5'- aGCUccUGCCGGCAcgcgcgcgcGGCGCugcCGCGCAg -3'
miRNA:   3'- -CGGauGCGGUUGU---------UCGCGua-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 133018 0.78 0.320969
Target:  5'- -gCUGCGCCAcccGCGGGCGCGccacCGCGCAc -3'
miRNA:   3'- cgGAUGCGGU---UGUUCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 132953 0.69 0.779493
Target:  5'- aGCgCUGCGCCGACGuGGCcGCcuucGUCGcCGCGc -3'
miRNA:   3'- -CG-GAUGCGGUUGU-UCG-CG----UAGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 132871 0.73 0.534661
Target:  5'- aGCCUGCGCCugcccuucuucGGCAagccgGGCGCcgCGgGCGg -3'
miRNA:   3'- -CGGAUGCGG-----------UUGU-----UCGCGuaGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 132739 0.72 0.617107
Target:  5'- gGCCc-CGCacuCAAGgGCAUCGCGCGc -3'
miRNA:   3'- -CGGauGCGguuGUUCgCGUAGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.