miRNA display CGI


Results 21 - 40 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 132628 0.66 0.927348
Target:  5'- cGCUgGCGCCGaggacGCGGGCGCGgcggcccuagcggcCGCGUg -3'
miRNA:   3'- -CGGaUGCGGU-----UGUUCGCGUa-------------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 132521 0.69 0.79813
Target:  5'- gGCUgggACGaguACGAGCGCGcccUCGCGCGc -3'
miRNA:   3'- -CGGa--UGCgguUGUUCGCGU---AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 132466 0.68 0.816143
Target:  5'- cGCCcuccGCGCCGGC-AGCGCcUCGC-CGu -3'
miRNA:   3'- -CGGa---UGCGGUUGuUCGCGuAGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 132107 0.69 0.788885
Target:  5'- gGCCgcgacGCGCuCGugGAGCGgGaCGCGCGg -3'
miRNA:   3'- -CGGa----UGCG-GUugUUCGCgUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 131884 0.66 0.901157
Target:  5'- gGCCgcCGCC-GCAcGCGaCggCGCGCAc -3'
miRNA:   3'- -CGGauGCGGuUGUuCGC-GuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 131758 0.71 0.700225
Target:  5'- ---cACGCCGGCcGGCGCGgcgggCGCGCc -3'
miRNA:   3'- cggaUGCGGUUGuUCGCGUa----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 131597 0.73 0.56525
Target:  5'- gGCCUACGCgcGCGcGCGCAcguaCGCGCGc -3'
miRNA:   3'- -CGGAUGCGguUGUuCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 131468 0.7 0.740648
Target:  5'- cGCCUccCGCCuccGCGAGCGCgccGUCGaCGCc -3'
miRNA:   3'- -CGGAu-GCGGu--UGUUCGCG---UAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 131417 0.67 0.865748
Target:  5'- cGCCgcUGCCGGCAgcGGCGCcg-GCGCc -3'
miRNA:   3'- -CGGauGCGGUUGU--UCGCGuagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 131186 0.67 0.880606
Target:  5'- cGgCUACGCCcGC-GGCGCGgUCGcCGCc -3'
miRNA:   3'- -CgGAUGCGGuUGuUCGCGU-AGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 130832 0.68 0.850015
Target:  5'- gGCCaccgUGCGCuCAACcuuGCGCG-CGCGCc -3'
miRNA:   3'- -CGG----AUGCG-GUUGuu-CGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 130617 0.83 0.164629
Target:  5'- uGCCUGCGCCuucAACAGcGCGCGgggCGCGCGu -3'
miRNA:   3'- -CGGAUGCGG---UUGUU-CGCGUa--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 130246 0.72 0.60564
Target:  5'- cGCC-GCGCCAGCGgcucguacugcggGGCGUccCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGUUGU-------------UCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 130115 0.74 0.514596
Target:  5'- -aCUGCGCCuugGCGAGcCGCcgCGCGCc -3'
miRNA:   3'- cgGAUGCGGu--UGUUC-GCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 129795 0.67 0.865748
Target:  5'- cGCCUuCGCCucc--GCGC-UCGCGCc -3'
miRNA:   3'- -CGGAuGCGGuuguuCGCGuAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 129541 0.66 0.925714
Target:  5'- gGgCUACGCCGcaaggugcaagacgGCGGGCGUAgaggaggaggcggcCGCGCGc -3'
miRNA:   3'- -CgGAUGCGGU--------------UGUUCGCGUa-------------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 129346 0.68 0.824892
Target:  5'- cGCCgcgguaGCGCCcccuuccGCGcGCGgGUCGCGCGg -3'
miRNA:   3'- -CGGa-----UGCGGu------UGUuCGCgUAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 129317 0.73 0.554996
Target:  5'- cGCCUGCGCUGGCGc-CGCGUCGC-CGa -3'
miRNA:   3'- -CGGAUGCGGUUGUucGCGUAGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 129184 0.7 0.750531
Target:  5'- uGCUgcCGCaGGCcAGCGCGUgGCGCAg -3'
miRNA:   3'- -CGGauGCGgUUGuUCGCGUAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 127858 0.73 0.554996
Target:  5'- gGUCgcgGCGCCAgggcACGAGCGggaGUCGCGCc -3'
miRNA:   3'- -CGGa--UGCGGU----UGUUCGCg--UAGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.