miRNA display CGI


Results 41 - 60 of 508 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 127801 0.72 0.596275
Target:  5'- gGCCgGCGCCGcggcgGCGGGcCGC-UCGCGCu -3'
miRNA:   3'- -CGGaUGCGGU-----UGUUC-GCGuAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 126944 0.69 0.760307
Target:  5'- gGCCagggGCGCCGggcGCGGGgGCGgcaGCGCGa -3'
miRNA:   3'- -CGGa---UGCGGU---UGUUCgCGUag-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 126537 0.68 0.824892
Target:  5'- cGCC-GCGCCucggcCAcGCGCcgccGUCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGuu---GUuCGCG----UAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 126457 0.66 0.907529
Target:  5'- aGCC-GCGCCAGCGcGCucGCcUCGCGg- -3'
miRNA:   3'- -CGGaUGCGGUUGUuCG--CGuAGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 126379 0.7 0.747577
Target:  5'- cCCUGCGCCuGgcucugcugggaguGCAGGCGCcaagagacuUCGCGCGc -3'
miRNA:   3'- cGGAUGCGG-U--------------UGUUCGCGu--------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 126070 0.73 0.543782
Target:  5'- aGCCgccCGCCGgccucgGCGGGCGCGcccaucuUCGCGCGu -3'
miRNA:   3'- -CGGau-GCGGU------UGUUCGCGU-------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 125327 0.67 0.865748
Target:  5'- gGCCUcgGCGUCcGCAGcGCGCAggGCGUc -3'
miRNA:   3'- -CGGA--UGCGGuUGUU-CGCGUagCGCGu -5'
23599 3' -54.9 NC_005261.1 + 125295 0.69 0.760307
Target:  5'- gGCCgcggGCGCCGgacccGCGGGCGC-UC-CGCGg -3'
miRNA:   3'- -CGGa---UGCGGU-----UGUUCGCGuAGcGCGU- -5'
23599 3' -54.9 NC_005261.1 + 124549 0.71 0.689946
Target:  5'- gGCgUACcgGCCAucuccCAGGCGCGccgcUCGCGCAc -3'
miRNA:   3'- -CGgAUG--CGGUu----GUUCGCGU----AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 124309 0.73 0.575552
Target:  5'- cGCaCUACGCgCAGC-AGCGCGUC-CGCc -3'
miRNA:   3'- -CG-GAUGCG-GUUGuUCGCGUAGcGCGu -5'
23599 3' -54.9 NC_005261.1 + 124242 0.75 0.437831
Target:  5'- cGCCgcCGCgGGCAGGCGCcgCGCGg- -3'
miRNA:   3'- -CGGauGCGgUUGUUCGCGuaGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 124084 0.67 0.857988
Target:  5'- aGCCcgGCGCCcGCGuAGCGC---GCGCAc -3'
miRNA:   3'- -CGGa-UGCGGuUGU-UCGCGuagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 123990 0.69 0.807219
Target:  5'- cGUCaggUACGCCGA-GAGCGCGUaGCGCu -3'
miRNA:   3'- -CGG---AUGCGGUUgUUCGCGUAgCGCGu -5'
23599 3' -54.9 NC_005261.1 + 123517 0.72 0.596275
Target:  5'- uGCCgcgucCGCUAGCAAGCuGUAcCGCGCGa -3'
miRNA:   3'- -CGGau---GCGGUUGUUCG-CGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 123407 0.66 0.923502
Target:  5'- cGCUUGCcgGCCAggggcgggcucgccACGGGcCGCAgccgcagcUCGCGCAu -3'
miRNA:   3'- -CGGAUG--CGGU--------------UGUUC-GCGU--------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 122922 0.69 0.807219
Target:  5'- aGCgcACGCCGAgcAGCGCGgccgCGCGCu -3'
miRNA:   3'- -CGgaUGCGGUUguUCGCGUa---GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 122817 0.66 0.919534
Target:  5'- cGCC--CGCCAGCAcccGCGCugcgGCGCGg -3'
miRNA:   3'- -CGGauGCGGUUGUu--CGCGuag-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 122619 0.71 0.669247
Target:  5'- uGCCUGUGCUugaacGGCGAGCGCGaggcccggCGCGCGu -3'
miRNA:   3'- -CGGAUGCGG-----UUGUUCGCGUa-------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 122471 0.72 0.596275
Target:  5'- aGCgUACGCCAggaucuccuGCAAGCGCGUCucuGUGUc -3'
miRNA:   3'- -CGgAUGCGGU---------UGUUCGCGUAG---CGCGu -5'
23599 3' -54.9 NC_005261.1 + 122264 0.67 0.894544
Target:  5'- cGCCgcCGCCGuCAGGgccguuaGCAUCaGCGCGg -3'
miRNA:   3'- -CGGauGCGGUuGUUCg------CGUAG-CGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.