miRNA display CGI


Results 61 - 80 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 121784 0.66 0.913655
Target:  5'- gGCCgcgGCCGGCGGGCuggGCAgggggCGCGUg -3'
miRNA:   3'- -CGGaugCGGUUGUUCG---CGUa----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 121641 0.77 0.359888
Target:  5'- gGCCgcCGCCGGCGAGCGCGggcugucCGCGUc -3'
miRNA:   3'- -CGGauGCGGUUGUUCGCGUa------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 120648 0.75 0.437831
Target:  5'- uGCCUGCGgCGcaaggcGCGGGCGCGccugugaucUCGCGCGc -3'
miRNA:   3'- -CGGAUGCgGU------UGUUCGCGU---------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 120424 0.69 0.769964
Target:  5'- gGCCUGgGCUggugAACAuGCGCggCGUGCGc -3'
miRNA:   3'- -CGGAUgCGG----UUGUuCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 120331 0.71 0.658846
Target:  5'- cGCgCUGCGUCccCGAGCGCGUCucccuGCGCu -3'
miRNA:   3'- -CG-GAUGCGGuuGUUCGCGUAG-----CGCGu -5'
23599 3' -54.9 NC_005261.1 + 120216 0.67 0.894544
Target:  5'- uCCUgguuccagaGCGCCGACGuggAGCGCcgcuUCGcCGCGg -3'
miRNA:   3'- cGGA---------UGCGGUUGU---UCGCGu---AGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 119901 0.7 0.710444
Target:  5'- aCCUgGCGCCGcgacGCGGGCGCcaaGUCGCaGCGc -3'
miRNA:   3'- cGGA-UGCGGU----UGUUCGCG---UAGCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 119014 0.68 0.824892
Target:  5'- gGCCcGCGCCGACGaaugAGCGgaCGUCGC-CGa -3'
miRNA:   3'- -CGGaUGCGGUUGU----UCGC--GUAGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 118906 0.75 0.452674
Target:  5'- gGCCUGCGUCuggguccggcgccGCGGGCGCGgcgcCGCGCGg -3'
miRNA:   3'- -CGGAUGCGGu------------UGUUCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 118816 0.66 0.919534
Target:  5'- cGUCUGCGCCcugggcgcGGCAcugccgcucugcGGCGCGgagggcggCGCGCc -3'
miRNA:   3'- -CGGAUGCGG--------UUGU------------UCGCGUa-------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 118771 0.67 0.894544
Target:  5'- cGCgcGCGCCGACGcugcagacGGCGCGcugaUgGCGCAc -3'
miRNA:   3'- -CGgaUGCGGUUGU--------UCGCGU----AgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 118719 0.7 0.740648
Target:  5'- aGCgU-CGCgGGCGGGCacgGCGUCGCGCu -3'
miRNA:   3'- -CGgAuGCGgUUGUUCG---CGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 118659 0.67 0.89387
Target:  5'- gGCCgcGCGCUcggggcugagggcGGCGGGCGC-UgGCGCAc -3'
miRNA:   3'- -CGGa-UGCGG-------------UUGUUCGCGuAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 118565 0.67 0.857988
Target:  5'- cGCCgu-GCCcGCGcGCGCGgcggCGCGCGc -3'
miRNA:   3'- -CGGaugCGGuUGUuCGCGUa---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 118244 0.78 0.313573
Target:  5'- gGCCUACGCCGucugcggcguGCcGGUGCAcugCGCGCAc -3'
miRNA:   3'- -CGGAUGCGGU----------UGuUCGCGUa--GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 118117 0.66 0.906274
Target:  5'- cGCUgcgcCGCCGGCucGCGCcgcucggccggcUCGCGCAg -3'
miRNA:   3'- -CGGau--GCGGUUGuuCGCGu-----------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 117712 0.69 0.788885
Target:  5'- gGCCgGCGCgCGggcccGCAAGCgGCcgCGCGCu -3'
miRNA:   3'- -CGGaUGCG-GU-----UGUUCG-CGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 117511 0.67 0.887693
Target:  5'- cGCCgGCGCCGccacgAUGAGCGUGUCcacCGCGg -3'
miRNA:   3'- -CGGaUGCGGU-----UGUUCGCGUAGc--GCGU- -5'
23599 3' -54.9 NC_005261.1 + 117314 0.73 0.533651
Target:  5'- aGCCccgGCGCgggCAGCAAGCGCAUccuugccCGCGCc -3'
miRNA:   3'- -CGGa--UGCG---GUUGUUCGCGUA-------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 116944 0.77 0.351846
Target:  5'- cGCCUuccGCGCCAACAAGaCGCGgaagGUGCAg -3'
miRNA:   3'- -CGGA---UGCGGUUGUUC-GCGUag--CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.