miRNA display CGI


Results 81 - 100 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 116911 0.68 0.850015
Target:  5'- cGCCaACGUCGACAGcCGCcgCGgGCu -3'
miRNA:   3'- -CGGaUGCGGUUGUUcGCGuaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 116674 0.67 0.865748
Target:  5'- uCCgcgGCGCCGgcccaaucGCGAGCGCcUCGCuCAu -3'
miRNA:   3'- cGGa--UGCGGU--------UGUUCGCGuAGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 116625 0.72 0.627545
Target:  5'- cGCCcgccCGCCGACGAGgGCGaggccCGCGCGc -3'
miRNA:   3'- -CGGau--GCGGUUGUUCgCGUa----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 116476 0.7 0.720594
Target:  5'- uGCCgGCGCgGGCGGG-GCGggCGCGCGg -3'
miRNA:   3'- -CGGaUGCGgUUGUUCgCGUa-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 116175 0.76 0.401984
Target:  5'- gGCCgcguccccgACGCCGcUggGCGCGUCGcCGCAg -3'
miRNA:   3'- -CGGa--------UGCGGUuGuuCGCGUAGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 116015 0.74 0.494843
Target:  5'- gGCCUGagcCGCCGACGGcGCGCAUggucUGCGCc -3'
miRNA:   3'- -CGGAU---GCGGUUGUU-CGCGUA----GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 115907 0.69 0.79813
Target:  5'- cGCCgucgucaGCGCCGGCcgcCGCGUcCGCGCGc -3'
miRNA:   3'- -CGGa------UGCGGUUGuucGCGUA-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 115830 0.73 0.554996
Target:  5'- --gUGCGCCAGCuugGGCGCGUuggccCGCGCGg -3'
miRNA:   3'- cggAUGCGGUUGu--UCGCGUA-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 113313 0.71 0.669247
Target:  5'- gGCCUGgGcCCGGCu-GCGCGagaaggUCGCGCGg -3'
miRNA:   3'- -CGGAUgC-GGUUGuuCGCGU------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 113225 0.66 0.925165
Target:  5'- cGCCguucgaggacuuUGCGCgCAGCAAGUuCG-CGCGCGg -3'
miRNA:   3'- -CGG------------AUGCG-GUUGUUCGcGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 112918 0.69 0.788885
Target:  5'- uGCgUGCGCgAggGCGAGgGCggCGCGCu -3'
miRNA:   3'- -CGgAUGCGgU--UGUUCgCGuaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 112570 0.68 0.824892
Target:  5'- cGCCUACcUCGagggcuGCGAGgGCGUCGUGUg -3'
miRNA:   3'- -CGGAUGcGGU------UGUUCgCGUAGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 112330 0.67 0.894544
Target:  5'- gGCCUcGCGCgAcuGCAAGCgggGCAUCauggGCGCGc -3'
miRNA:   3'- -CGGA-UGCGgU--UGUUCG---CGUAG----CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 111457 0.66 0.901157
Target:  5'- aGCCggGCGCCGGCGAG-GCcaaaaggCGgGCGg -3'
miRNA:   3'- -CGGa-UGCGGUUGUUCgCGua-----GCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 111349 0.71 0.669247
Target:  5'- aGCCgGCGCCGACc-GCGCGUCuGCuGCc -3'
miRNA:   3'- -CGGaUGCGGUUGuuCGCGUAG-CG-CGu -5'
23599 3' -54.9 NC_005261.1 + 110507 0.67 0.894544
Target:  5'- gGCCaGCGUCAcggccgucgucuGCgGGGCGCAggagggCGCGCGc -3'
miRNA:   3'- -CGGaUGCGGU------------UG-UUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 110303 0.74 0.485096
Target:  5'- cGCCUGCGCCGcCGAGUacgGCAacCGCGCc -3'
miRNA:   3'- -CGGAUGCGGUuGUUCG---CGUa-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 109208 0.66 0.907529
Target:  5'- cGCagGCGCUcgUAGGCGCGgcacgcCGCGCGc -3'
miRNA:   3'- -CGgaUGCGGuuGUUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 109178 0.66 0.901157
Target:  5'- uUCUcCGCUAGCAGcGcCGCGUCGgGCGu -3'
miRNA:   3'- cGGAuGCGGUUGUU-C-GCGUAGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 109023 0.7 0.750531
Target:  5'- gGCCgaacgcCGCCGugGcGCGCAgcCGCGCGg -3'
miRNA:   3'- -CGGau----GCGGUugUuCGCGUa-GCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.