miRNA display CGI


Results 41 - 60 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 19874 0.66 0.925165
Target:  5'- aCCc-CGCCGGCGGGCcCGUCGuCGCc -3'
miRNA:   3'- cGGauGCGGUUGUUCGcGUAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 35448 0.66 0.925165
Target:  5'- cGCCc-CGCgGGucUAGGCGCggCGCGCGc -3'
miRNA:   3'- -CGGauGCGgUU--GUUCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 88561 0.66 0.925165
Target:  5'- cCCgaGCGCCGGCGA-CGCGUCcCGCu -3'
miRNA:   3'- cGGa-UGCGGUUGUUcGCGUAGcGCGu -5'
23599 3' -54.9 NC_005261.1 + 103991 0.66 0.925165
Target:  5'- cGCCgcCGCC-GCGgucggccaguauGGCGCG-CGCGCu -3'
miRNA:   3'- -CGGauGCGGuUGU------------UCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 129541 0.66 0.925714
Target:  5'- gGgCUACGCCGcaaggugcaagacgGCGGGCGUAgaggaggaggcggcCGCGCGc -3'
miRNA:   3'- -CgGAUGCGGU--------------UGUUCGCGUa-------------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 44859 0.66 0.925165
Target:  5'- aGCCgcgaggaagaGCGCCGccGCGAGCGCcgCGgGgAu -3'
miRNA:   3'- -CGGa---------UGCGGU--UGUUCGCGuaGCgCgU- -5'
23599 3' -54.9 NC_005261.1 + 20813 0.66 0.925165
Target:  5'- cGCCUgguuuACGCgCAGCugaacuGCGCGUuCGCGgGg -3'
miRNA:   3'- -CGGA-----UGCG-GUUGuu----CGCGUA-GCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 62623 0.66 0.919534
Target:  5'- gGCCaucaGCGCCAGCGuguccGGCGCGaCGC-CGu -3'
miRNA:   3'- -CGGa---UGCGGUUGU-----UCGCGUaGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 86237 0.66 0.919534
Target:  5'- uGCCgcaGCCGAUGcAGCGUcgugugCGCGCAc -3'
miRNA:   3'- -CGGaugCGGUUGU-UCGCGua----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 90060 0.66 0.919534
Target:  5'- aGCCagcgGCGCCccGCGGGCGCcgaGgGCAg -3'
miRNA:   3'- -CGGa---UGCGGu-UGUUCGCGuagCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 118816 0.66 0.919534
Target:  5'- cGUCUGCGCCcugggcgcGGCAcugccgcucugcGGCGCGgagggcggCGCGCc -3'
miRNA:   3'- -CGGAUGCGG--------UUGU------------UCGCGUa-------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 122817 0.66 0.919534
Target:  5'- cGCC--CGCCAGCAcccGCGCugcgGCGCGg -3'
miRNA:   3'- -CGGauGCGGUUGUu--CGCGuag-CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 134093 0.66 0.919534
Target:  5'- aGCuCUcggcGCGCCGGCGcGCGC-UCGcCGCc -3'
miRNA:   3'- -CG-GA----UGCGGUUGUuCGCGuAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 31745 0.66 0.919534
Target:  5'- gGCCcg-GCCGucggGCAGGCGCA-CGUGUAc -3'
miRNA:   3'- -CGGaugCGGU----UGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 67662 0.66 0.919534
Target:  5'- cGUCcGCGCgCGGCGccaGGCGCGgugaGCGCGu -3'
miRNA:   3'- -CGGaUGCG-GUUGU---UCGCGUag--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 90737 0.66 0.919534
Target:  5'- gGCC-GCGCCug-AGGCGC-UgGCGCGg -3'
miRNA:   3'- -CGGaUGCGGuugUUCGCGuAgCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 107757 0.66 0.919534
Target:  5'- gGCC-ACGCCccAGCGcuCGCuggCGCGCGg -3'
miRNA:   3'- -CGGaUGCGG--UUGUucGCGua-GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 123407 0.66 0.923502
Target:  5'- cGCUUGCcgGCCAggggcgggcucgccACGGGcCGCAgccgcagcUCGCGCAu -3'
miRNA:   3'- -CGGAUG--CGGU--------------UGUUC-GCGU--------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 80086 0.66 0.925165
Target:  5'- ---gACGCgGACcGGCGCG-CGCGCc -3'
miRNA:   3'- cggaUGCGgUUGuUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 18521 0.66 0.925165
Target:  5'- aGCCcGCGUCAAUGacGGCGgCGUCcCGCGg -3'
miRNA:   3'- -CGGaUGCGGUUGU--UCGC-GUAGcGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.