miRNA display CGI


Results 81 - 100 of 508 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 91699 0.66 0.913655
Target:  5'- cGCCUGCGaCAGCcGGCuGCAaggccggcUCGcCGCGg -3'
miRNA:   3'- -CGGAUGCgGUUGuUCG-CGU--------AGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 63955 0.66 0.913655
Target:  5'- aGCCccgUGCG-CAGCuGGUGCGUCaGCGCc -3'
miRNA:   3'- -CGG---AUGCgGUUGuUCGCGUAG-CGCGu -5'
23599 3' -54.9 NC_005261.1 + 16061 0.66 0.913655
Target:  5'- gGCCcGCGCCgAGCcGGCGCGUguagacgaaguaCGCgGCGg -3'
miRNA:   3'- -CGGaUGCGG-UUGuUCGCGUA------------GCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 95664 0.66 0.911843
Target:  5'- cGCCgcgacggGCGCgGgugugagcacgugcACGAGCGCGaguaugCGCGCGg -3'
miRNA:   3'- -CGGa------UGCGgU--------------UGUUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 97099 0.66 0.911843
Target:  5'- gGCCggggGCGCCAGCcgggccgcggccggAGGCGCcgCG-GCc -3'
miRNA:   3'- -CGGa---UGCGGUUG--------------UUCGCGuaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 95617 0.66 0.910009
Target:  5'- uGCUggaccGCGCgGuccaggagcggcuggGCGAGCGCGaCGCGCGg -3'
miRNA:   3'- -CGGa----UGCGgU---------------UGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 97401 0.66 0.907529
Target:  5'- cGCCUGcCGCgGGCuuGGCGgG-CGCGCc -3'
miRNA:   3'- -CGGAU-GCGgUUGu-UCGCgUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 66267 0.66 0.913655
Target:  5'- cGCCguccaccggGCGCCcGCGgcugucgcAGUGCGUCagGCGCGg -3'
miRNA:   3'- -CGGa--------UGCGGuUGU--------UCGCGUAG--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 71055 0.66 0.913655
Target:  5'- cGCCgUGgGCCAGCcgccGCGCggCGgGCGg -3'
miRNA:   3'- -CGG-AUgCGGUUGuu--CGCGuaGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 79419 0.66 0.913655
Target:  5'- gGCCcgUGUCGGCGAGCuCggCGCGCGu -3'
miRNA:   3'- -CGGauGCGGUUGUUCGcGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 90060 0.66 0.919534
Target:  5'- aGCCagcgGCGCCccGCGGGCGCcgaGgGCAg -3'
miRNA:   3'- -CGGa---UGCGGu-UGUUCGCGuagCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 86237 0.66 0.919534
Target:  5'- uGCCgcaGCCGAUGcAGCGUcgugugCGCGCAc -3'
miRNA:   3'- -CGGaugCGGUUGU-UCGCGua----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 62623 0.66 0.919534
Target:  5'- gGCCaucaGCGCCAGCGuguccGGCGCGaCGC-CGu -3'
miRNA:   3'- -CGGa---UGCGGUUGU-----UCGCGUaGCGcGU- -5'
23599 3' -54.9 NC_005261.1 + 38488 0.66 0.919534
Target:  5'- gGCCgcggcgGCGUCGACugGAGCGUcguauaaggCGCGCGc -3'
miRNA:   3'- -CGGa-----UGCGGUUG--UUCGCGua-------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 93206 0.66 0.919534
Target:  5'- aGCCUcggGCuCCAGC-AGCGCca-GCGCGg -3'
miRNA:   3'- -CGGA---UGcGGUUGuUCGCGuagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 42160 0.66 0.918957
Target:  5'- cGCgaACGCCGgaaGCGAGCcguggacGCAggGCGCGa -3'
miRNA:   3'- -CGgaUGCGGU---UGUUCG-------CGUagCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 4557 0.66 0.918957
Target:  5'- gGCCUugGCUGgauccGCGGGCGgGUCcggcgggGCGCc -3'
miRNA:   3'- -CGGAugCGGU-----UGUUCGCgUAG-------CGCGu -5'
23599 3' -54.9 NC_005261.1 + 95325 0.66 0.913655
Target:  5'- cCCUACGuCCGgguccagaacACGGGCGUGUcCGUGCu -3'
miRNA:   3'- cGGAUGC-GGU----------UGUUCGCGUA-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 90782 0.66 0.913655
Target:  5'- gGCCgcugcgGCgGCCGGCGcGCGCuaccgCGUGCGc -3'
miRNA:   3'- -CGGa-----UG-CGGUUGUuCGCGua---GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 121784 0.66 0.913655
Target:  5'- gGCCgcgGCCGGCGGGCuggGCAgggggCGCGUg -3'
miRNA:   3'- -CGGaugCGGUUGUUCG---CGUa----GCGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.