miRNA display CGI


Results 121 - 140 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 44423 0.66 0.901157
Target:  5'- cGCgUACGCCGACGacguggAGCGgCucUCGCGg- -3'
miRNA:   3'- -CGgAUGCGGUUGU------UCGC-Gu-AGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 29987 0.66 0.901157
Target:  5'- cGCCggcGCGuCCGGCAgcGGCGCGUCugaGCu -3'
miRNA:   3'- -CGGa--UGC-GGUUGU--UCGCGUAGcg-CGu -5'
23599 3' -54.9 NC_005261.1 + 133837 0.66 0.907529
Target:  5'- gGCCgcgugcGCGCCGugGccGGCGCG-CGCGa- -3'
miRNA:   3'- -CGGa-----UGCGGUugU--UCGCGUaGCGCgu -5'
23599 3' -54.9 NC_005261.1 + 18436 0.66 0.907529
Target:  5'- uCCU-CGCCGGgcAGCGCGUucccCGUGCAg -3'
miRNA:   3'- cGGAuGCGGUUguUCGCGUA----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 32546 0.66 0.907529
Target:  5'- gGCCgcgGCGCgGGCcGGCGCG-CGUGgAa -3'
miRNA:   3'- -CGGa--UGCGgUUGuUCGCGUaGCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 79419 0.66 0.913655
Target:  5'- gGCCcgUGUCGGCGAGCuCggCGCGCGu -3'
miRNA:   3'- -CGGauGCGGUUGUUCGcGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 71055 0.66 0.913655
Target:  5'- cGCCgUGgGCCAGCcgccGCGCggCGgGCGg -3'
miRNA:   3'- -CGG-AUgCGGUUGuu--CGCGuaGCgCGU- -5'
23599 3' -54.9 NC_005261.1 + 66267 0.66 0.913655
Target:  5'- cGCCguccaccggGCGCCcGCGgcugucgcAGUGCGUCagGCGCGg -3'
miRNA:   3'- -CGGa--------UGCGGuUGU--------UCGCGUAG--CGCGU- -5'
23599 3' -54.9 NC_005261.1 + 58289 0.66 0.913655
Target:  5'- gGCCggcGCGCCGGgGGGCGCGgggaggGgGCGg -3'
miRNA:   3'- -CGGa--UGCGGUUgUUCGCGUag----CgCGU- -5'
23599 3' -54.9 NC_005261.1 + 58024 0.66 0.913655
Target:  5'- uGCCgcgGCGgCAGCuccaggGAGCGCGgcCGCGUg -3'
miRNA:   3'- -CGGa--UGCgGUUG------UUCGCGUa-GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 56107 0.66 0.913655
Target:  5'- uCCUGCGCgAGCGgcgggAGCGCGcCGCaggGCGg -3'
miRNA:   3'- cGGAUGCGgUUGU-----UCGCGUaGCG---CGU- -5'
23599 3' -54.9 NC_005261.1 + 91699 0.66 0.913655
Target:  5'- cGCCUGCGaCAGCcGGCuGCAaggccggcUCGcCGCGg -3'
miRNA:   3'- -CGGAUGCgGUUGuUCG-CGU--------AGC-GCGU- -5'
23599 3' -54.9 NC_005261.1 + 63955 0.66 0.913655
Target:  5'- aGCCccgUGCG-CAGCuGGUGCGUCaGCGCc -3'
miRNA:   3'- -CGG---AUGCgGUUGuUCGCGUAG-CGCGu -5'
23599 3' -54.9 NC_005261.1 + 16061 0.66 0.913655
Target:  5'- gGCCcGCGCCgAGCcGGCGCGUguagacgaaguaCGCgGCGg -3'
miRNA:   3'- -CGGaUGCGG-UUGuUCGCGUA------------GCG-CGU- -5'
23599 3' -54.9 NC_005261.1 + 95664 0.66 0.911843
Target:  5'- cGCCgcgacggGCGCgGgugugagcacgugcACGAGCGCGaguaugCGCGCGg -3'
miRNA:   3'- -CGGa------UGCGgU--------------UGUUCGCGUa-----GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 97099 0.66 0.911843
Target:  5'- gGCCggggGCGCCAGCcgggccgcggccggAGGCGCcgCG-GCc -3'
miRNA:   3'- -CGGa---UGCGGUUG--------------UUCGCGuaGCgCGu -5'
23599 3' -54.9 NC_005261.1 + 95617 0.66 0.910009
Target:  5'- uGCUggaccGCGCgGuccaggagcggcuggGCGAGCGCGaCGCGCGg -3'
miRNA:   3'- -CGGa----UGCGgU---------------UGUUCGCGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 97401 0.66 0.907529
Target:  5'- cGCCUGcCGCgGGCuuGGCGgG-CGCGCc -3'
miRNA:   3'- -CGGAU-GCGgUUGu-UCGCgUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 90222 0.66 0.907529
Target:  5'- cGCCcuCGCgCGGCGGGCGgG-CGCGCc -3'
miRNA:   3'- -CGGauGCG-GUUGUUCGCgUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 77557 0.66 0.907529
Target:  5'- cGCCgcCGCCAgu-GGCGCcgcCGCGCc -3'
miRNA:   3'- -CGGauGCGGUuguUCGCGua-GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.