Results 41 - 60 of 508 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 3' | -54.9 | NC_005261.1 | + | 19874 | 0.66 | 0.925165 |
Target: 5'- aCCc-CGCCGGCGGGCcCGUCGuCGCc -3' miRNA: 3'- cGGauGCGGUUGUUCGcGUAGC-GCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 35448 | 0.66 | 0.925165 |
Target: 5'- cGCCc-CGCgGGucUAGGCGCggCGCGCGc -3' miRNA: 3'- -CGGauGCGgUU--GUUCGCGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 88561 | 0.66 | 0.925165 |
Target: 5'- cCCgaGCGCCGGCGA-CGCGUCcCGCu -3' miRNA: 3'- cGGa-UGCGGUUGUUcGCGUAGcGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 103991 | 0.66 | 0.925165 |
Target: 5'- cGCCgcCGCC-GCGgucggccaguauGGCGCG-CGCGCu -3' miRNA: 3'- -CGGauGCGGuUGU------------UCGCGUaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 129541 | 0.66 | 0.925714 |
Target: 5'- gGgCUACGCCGcaaggugcaagacgGCGGGCGUAgaggaggaggcggcCGCGCGc -3' miRNA: 3'- -CgGAUGCGGU--------------UGUUCGCGUa-------------GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 44859 | 0.66 | 0.925165 |
Target: 5'- aGCCgcgaggaagaGCGCCGccGCGAGCGCcgCGgGgAu -3' miRNA: 3'- -CGGa---------UGCGGU--UGUUCGCGuaGCgCgU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 20813 | 0.66 | 0.925165 |
Target: 5'- cGCCUgguuuACGCgCAGCugaacuGCGCGUuCGCGgGg -3' miRNA: 3'- -CGGA-----UGCG-GUUGuu----CGCGUA-GCGCgU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 62623 | 0.66 | 0.919534 |
Target: 5'- gGCCaucaGCGCCAGCGuguccGGCGCGaCGC-CGu -3' miRNA: 3'- -CGGa---UGCGGUUGU-----UCGCGUaGCGcGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 86237 | 0.66 | 0.919534 |
Target: 5'- uGCCgcaGCCGAUGcAGCGUcgugugCGCGCAc -3' miRNA: 3'- -CGGaugCGGUUGU-UCGCGua----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 90060 | 0.66 | 0.919534 |
Target: 5'- aGCCagcgGCGCCccGCGGGCGCcgaGgGCAg -3' miRNA: 3'- -CGGa---UGCGGu-UGUUCGCGuagCgCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 118816 | 0.66 | 0.919534 |
Target: 5'- cGUCUGCGCCcugggcgcGGCAcugccgcucugcGGCGCGgagggcggCGCGCc -3' miRNA: 3'- -CGGAUGCGG--------UUGU------------UCGCGUa-------GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 122817 | 0.66 | 0.919534 |
Target: 5'- cGCC--CGCCAGCAcccGCGCugcgGCGCGg -3' miRNA: 3'- -CGGauGCGGUUGUu--CGCGuag-CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 134093 | 0.66 | 0.919534 |
Target: 5'- aGCuCUcggcGCGCCGGCGcGCGC-UCGcCGCc -3' miRNA: 3'- -CG-GA----UGCGGUUGUuCGCGuAGC-GCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 31745 | 0.66 | 0.919534 |
Target: 5'- gGCCcg-GCCGucggGCAGGCGCA-CGUGUAc -3' miRNA: 3'- -CGGaugCGGU----UGUUCGCGUaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 67662 | 0.66 | 0.919534 |
Target: 5'- cGUCcGCGCgCGGCGccaGGCGCGgugaGCGCGu -3' miRNA: 3'- -CGGaUGCG-GUUGU---UCGCGUag--CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 90737 | 0.66 | 0.919534 |
Target: 5'- gGCC-GCGCCug-AGGCGC-UgGCGCGg -3' miRNA: 3'- -CGGaUGCGGuugUUCGCGuAgCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 107757 | 0.66 | 0.919534 |
Target: 5'- gGCC-ACGCCccAGCGcuCGCuggCGCGCGg -3' miRNA: 3'- -CGGaUGCGG--UUGUucGCGua-GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 123407 | 0.66 | 0.923502 |
Target: 5'- cGCUUGCcgGCCAggggcgggcucgccACGGGcCGCAgccgcagcUCGCGCAu -3' miRNA: 3'- -CGGAUG--CGGU--------------UGUUC-GCGU--------AGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 80086 | 0.66 | 0.925165 |
Target: 5'- ---gACGCgGACcGGCGCG-CGCGCc -3' miRNA: 3'- cggaUGCGgUUGuUCGCGUaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 18521 | 0.66 | 0.925165 |
Target: 5'- aGCCcGCGUCAAUGacGGCGgCGUCcCGCGg -3' miRNA: 3'- -CGGaUGCGGUUGU--UCGC-GUAGcGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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