Results 101 - 120 of 508 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 3' | -54.9 | NC_005261.1 | + | 109208 | 0.66 | 0.907529 |
Target: 5'- cGCagGCGCUcgUAGGCGCGgcacgcCGCGCGc -3' miRNA: 3'- -CGgaUGCGGuuGUUCGCGUa-----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 93020 | 0.66 | 0.907529 |
Target: 5'- cGCgaGCGCCcACAAGCc---CGCGCAc -3' miRNA: 3'- -CGgaUGCGGuUGUUCGcguaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 56316 | 0.66 | 0.907529 |
Target: 5'- cGCCUGCuaCUGACGAGCcugGCG-CGCGCc -3' miRNA: 3'- -CGGAUGc-GGUUGUUCG---CGUaGCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 126457 | 0.66 | 0.907529 |
Target: 5'- aGCC-GCGCCAGCGcGCucGCcUCGCGg- -3' miRNA: 3'- -CGGaUGCGGUUGUuCG--CGuAGCGCgu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 118117 | 0.66 | 0.906274 |
Target: 5'- cGCUgcgcCGCCGGCucGCGCcgcucggccggcUCGCGCAg -3' miRNA: 3'- -CGGau--GCGGUUGuuCGCGu-----------AGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 95664 | 0.66 | 0.911843 |
Target: 5'- cGCCgcgacggGCGCgGgugugagcacgugcACGAGCGCGaguaugCGCGCGg -3' miRNA: 3'- -CGGa------UGCGgU--------------UGUUCGCGUa-----GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 16061 | 0.66 | 0.913655 |
Target: 5'- gGCCcGCGCCgAGCcGGCGCGUguagacgaaguaCGCgGCGg -3' miRNA: 3'- -CGGaUGCGG-UUGuUCGCGUA------------GCG-CGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 42160 | 0.66 | 0.918957 |
Target: 5'- cGCgaACGCCGgaaGCGAGCcguggacGCAggGCGCGa -3' miRNA: 3'- -CGgaUGCGGU---UGUUCG-------CGUagCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 4557 | 0.66 | 0.918957 |
Target: 5'- gGCCUugGCUGgauccGCGGGCGgGUCcggcgggGCGCc -3' miRNA: 3'- -CGGAugCGGU-----UGUUCGCgUAG-------CGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 95325 | 0.66 | 0.913655 |
Target: 5'- cCCUACGuCCGgguccagaacACGGGCGUGUcCGUGCu -3' miRNA: 3'- cGGAUGC-GGU----------UGUUCGCGUA-GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 90782 | 0.66 | 0.913655 |
Target: 5'- gGCCgcugcgGCgGCCGGCGcGCGCuaccgCGUGCGc -3' miRNA: 3'- -CGGa-----UG-CGGUUGUuCGCGua---GCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 121784 | 0.66 | 0.913655 |
Target: 5'- gGCCgcgGCCGGCGGGCuggGCAgggggCGCGUg -3' miRNA: 3'- -CGGaugCGGUUGUUCG---CGUa----GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 79419 | 0.66 | 0.913655 |
Target: 5'- gGCCcgUGUCGGCGAGCuCggCGCGCGu -3' miRNA: 3'- -CGGauGCGGUUGUUCGcGuaGCGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 71055 | 0.66 | 0.913655 |
Target: 5'- cGCCgUGgGCCAGCcgccGCGCggCGgGCGg -3' miRNA: 3'- -CGG-AUgCGGUUGuu--CGCGuaGCgCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 66267 | 0.66 | 0.913655 |
Target: 5'- cGCCguccaccggGCGCCcGCGgcugucgcAGUGCGUCagGCGCGg -3' miRNA: 3'- -CGGa--------UGCGGuUGU--------UCGCGUAG--CGCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 58289 | 0.66 | 0.913655 |
Target: 5'- gGCCggcGCGCCGGgGGGCGCGgggaggGgGCGg -3' miRNA: 3'- -CGGa--UGCGGUUgUUCGCGUag----CgCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 58024 | 0.66 | 0.913655 |
Target: 5'- uGCCgcgGCGgCAGCuccaggGAGCGCGgcCGCGUg -3' miRNA: 3'- -CGGa--UGCgGUUG------UUCGCGUa-GCGCGu -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 56107 | 0.66 | 0.913655 |
Target: 5'- uCCUGCGCgAGCGgcgggAGCGCGcCGCaggGCGg -3' miRNA: 3'- cGGAUGCGgUUGU-----UCGCGUaGCG---CGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 91699 | 0.66 | 0.913655 |
Target: 5'- cGCCUGCGaCAGCcGGCuGCAaggccggcUCGcCGCGg -3' miRNA: 3'- -CGGAUGCgGUUGuUCG-CGU--------AGC-GCGU- -5' |
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23599 | 3' | -54.9 | NC_005261.1 | + | 63955 | 0.66 | 0.913655 |
Target: 5'- aGCCccgUGCG-CAGCuGGUGCGUCaGCGCc -3' miRNA: 3'- -CGG---AUGCgGUUGuUCGCGUAG-CGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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