miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 134880 0.66 0.961856
Target:  5'- -----cGCGGGCcCCUGCUGUGCguucggugguggAGCg -3'
miRNA:   3'- acaugaUGUUCGaGGACGACGCG------------UCG- -5'
23599 5' -53 NC_005261.1 + 273 0.66 0.961856
Target:  5'- cGgcgGCUGCGgcggcGGCUgCggcggcgGCUGCgGCGGCg -3'
miRNA:   3'- aCa--UGAUGU-----UCGAgGa------CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 117093 0.66 0.961856
Target:  5'- aGUACUcgauCAuGCUCCcGaC-GCGCGGCg -3'
miRNA:   3'- aCAUGAu---GUuCGAGGaC-GaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 137956 0.66 0.961856
Target:  5'- cGgcgGCUGCGgcggcGGCUgCggcggcgGCUGCgGCGGCg -3'
miRNA:   3'- aCa--UGAUGU-----UCGAgGa------CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 7882 0.66 0.961856
Target:  5'- --gGCaGCGAGCggcUCUGUuccgGCGCGGCg -3'
miRNA:   3'- acaUGaUGUUCGa--GGACGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 56813 0.66 0.961856
Target:  5'- --gGCcACGGuGUUCCUGgUGCcGCGGCg -3'
miRNA:   3'- acaUGaUGUU-CGAGGACgACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 118187 0.66 0.961856
Target:  5'- cUGgGCcGCGGGCcccgcgCCUGCcGCGCuGCg -3'
miRNA:   3'- -ACaUGaUGUUCGa-----GGACGaCGCGuCG- -5'
23599 5' -53 NC_005261.1 + 134418 0.66 0.961856
Target:  5'- cGUgaACUGCu-GCUCCacgcUGCUcGCGgGGCu -3'
miRNA:   3'- aCA--UGAUGuuCGAGG----ACGA-CGCgUCG- -5'
23599 5' -53 NC_005261.1 + 39074 0.66 0.958119
Target:  5'- aGUACUACAcccGCUCCU-CgGacgGCGGCa -3'
miRNA:   3'- aCAUGAUGUu--CGAGGAcGaCg--CGUCG- -5'
23599 5' -53 NC_005261.1 + 83134 0.66 0.958119
Target:  5'- --cGCgcgGCAcGC-CCUGCagGUGCGGCa -3'
miRNA:   3'- acaUGa--UGUuCGaGGACGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 135675 0.66 0.958119
Target:  5'- --cGCUcgAgGAGCUCUgcGCcGCGCGGCg -3'
miRNA:   3'- acaUGA--UgUUCGAGGa-CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 14957 0.66 0.958119
Target:  5'- --aGCgaGCGGGCgugCCUGgggcgaCUGCGCGGCc -3'
miRNA:   3'- acaUGa-UGUUCGa--GGAC------GACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 44022 0.66 0.958119
Target:  5'- --gGCgcgGCGGGCggCC-GCcGCGCGGCg -3'
miRNA:   3'- acaUGa--UGUUCGa-GGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 68540 0.66 0.958119
Target:  5'- --gGCgcccGCGcGCccCCUGCUGCGCGGg -3'
miRNA:   3'- acaUGa---UGUuCGa-GGACGACGCGUCg -5'
23599 5' -53 NC_005261.1 + 97842 0.66 0.958119
Target:  5'- cGgggGCgGCGGGCgccgCCgcgGCaGCGCGGCc -3'
miRNA:   3'- aCa--UGaUGUUCGa---GGa--CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 109204 0.66 0.958119
Target:  5'- cGUGC-GCAGGCgCUcGUagGCGCGGCa -3'
miRNA:   3'- aCAUGaUGUUCGaGGaCGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 134561 0.66 0.954139
Target:  5'- -uUGCUGgGcGGCgCCgcgGCUGCGCAGg -3'
miRNA:   3'- acAUGAUgU-UCGaGGa--CGACGCGUCg -5'
23599 5' -53 NC_005261.1 + 107628 0.66 0.954139
Target:  5'- cGUGCgcgggaacuCGAGCgCCcgcGCUGCGCGcGCa -3'
miRNA:   3'- aCAUGau-------GUUCGaGGa--CGACGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 55151 0.66 0.954139
Target:  5'- aUGUGCgcgcGCGAGCgccgCCgccggcgGCUcGCGgGGCg -3'
miRNA:   3'- -ACAUGa---UGUUCGa---GGa------CGA-CGCgUCG- -5'
23599 5' -53 NC_005261.1 + 48388 0.66 0.954139
Target:  5'- cUGUACUugGGGCUCgCgaaGC-GCGCcuuguGGCu -3'
miRNA:   3'- -ACAUGAugUUCGAG-Ga--CGaCGCG-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.