Results 81 - 100 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 5' | -53 | NC_005261.1 | + | 1464 | 0.69 | 0.847647 |
Target: 5'- cGUGC----GGCUCCaGCaGCGCGGCc -3' miRNA: 3'- aCAUGauguUCGAGGaCGaCGCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 45536 | 0.69 | 0.845141 |
Target: 5'- cGUGCUgccGCAcuacgcuguugcccGGCUgCUGCUG-GCGGCc -3' miRNA: 3'- aCAUGA---UGU--------------UCGAgGACGACgCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 36982 | 0.69 | 0.840072 |
Target: 5'- --cGgUGCGGGCUCCagccggagcccgcggGCUGCGCGGg -3' miRNA: 3'- acaUgAUGUUCGAGGa--------------CGACGCGUCg -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 97751 | 0.69 | 0.855861 |
Target: 5'- --gGCgggGCGGGCUCg-GCgGCGCGGCc -3' miRNA: 3'- acaUGa--UGUUCGAGgaCGaCGCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 98670 | 0.69 | 0.855861 |
Target: 5'- --gGCgaggGCGGGCUCCgccgggGCcggagGCGCGGCc -3' miRNA: 3'- acaUGa---UGUUCGAGGa-----CGa----CGCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 101702 | 0.69 | 0.855861 |
Target: 5'- cGUGgU-CGAagcGCUCCaGCUGCGcCAGCg -3' miRNA: 3'- aCAUgAuGUU---CGAGGaCGACGC-GUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 51812 | 0.69 | 0.874663 |
Target: 5'- cGUGCUGCGGcugguGCgcgCCUGCcUGCaccaccggcgcaaggGCAGCg -3' miRNA: 3'- aCAUGAUGUU-----CGa--GGACG-ACG---------------CGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 131829 | 0.69 | 0.871621 |
Target: 5'- --cGCUugAcgcGGCgcccgCCUGCUGCGgGGUg -3' miRNA: 3'- acaUGAugU---UCGa----GGACGACGCgUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 124409 | 0.69 | 0.870855 |
Target: 5'- gGUACUGCAGcGCcauggCCUGCUucaucgcGCGCcGCc -3' miRNA: 3'- aCAUGAUGUU-CGa----GGACGA-------CGCGuCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 65587 | 0.69 | 0.870855 |
Target: 5'- gGU-CcGCGAGCUCCUGCU-CGCcggggucGGCg -3' miRNA: 3'- aCAuGaUGUUCGAGGACGAcGCG-------UCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 133017 | 0.69 | 0.869315 |
Target: 5'- --cGCUGCGccacccgcgGGCgcgCCaccgcgcacgcacgUGCUGCGCGGCg -3' miRNA: 3'- acaUGAUGU---------UCGa--GG--------------ACGACGCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 135462 | 0.69 | 0.863855 |
Target: 5'- --cGCUGCGGGacCUCgUaCUGCGCGGCg -3' miRNA: 3'- acaUGAUGUUC--GAGgAcGACGCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 43629 | 0.7 | 0.78466 |
Target: 5'- cGUGCUGUggGCgCCcGUgugGCGCGGCg -3' miRNA: 3'- aCAUGAUGuuCGaGGaCGa--CGCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 56091 | 0.7 | 0.78466 |
Target: 5'- --cGCUACuuccagcGGCUCCUGCgcgaGCGGCg -3' miRNA: 3'- acaUGAUGu------UCGAGGACGacg-CGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 85975 | 0.7 | 0.78466 |
Target: 5'- cGUgAUUGCGcGCUCgaGCUGCGCcGCc -3' miRNA: 3'- aCA-UGAUGUuCGAGgaCGACGCGuCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 102406 | 0.7 | 0.794183 |
Target: 5'- --cGCgcCAGcGCUCCUccugccGCUGCGCGGCc -3' miRNA: 3'- acaUGauGUU-CGAGGA------CGACGCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 93198 | 0.7 | 0.812742 |
Target: 5'- uUGUACacagccuCGGGCUCCaGCaGCGcCAGCg -3' miRNA: 3'- -ACAUGau-----GUUCGAGGaCGaCGC-GUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 111751 | 0.7 | 0.821759 |
Target: 5'- aGUGCggGC-AGCUCgUGCaccUGCGCuGCg -3' miRNA: 3'- aCAUGa-UGuUCGAGgACG---ACGCGuCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 129202 | 0.71 | 0.765177 |
Target: 5'- cGUGgcGCAGcuGCUUCUGCUGgUGCGGCg -3' miRNA: 3'- aCAUgaUGUU--CGAGGACGAC-GCGUCG- -5' |
|||||||
23599 | 5' | -53 | NC_005261.1 | + | 23238 | 0.71 | 0.755237 |
Target: 5'- gGUGCaGCGGGCcggCCUGCUcgggcgagaGCuGCAGCa -3' miRNA: 3'- aCAUGaUGUUCGa--GGACGA---------CG-CGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home