Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 5' | -53 | NC_005261.1 | + | 83134 | 0.66 | 0.958119 |
Target: 5'- --cGCgcgGCAcGC-CCUGCagGUGCGGCa -3' miRNA: 3'- acaUGa--UGUuCGaGGACGa-CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 135675 | 0.66 | 0.958119 |
Target: 5'- --cGCUcgAgGAGCUCUgcGCcGCGCGGCg -3' miRNA: 3'- acaUGA--UgUUCGAGGa-CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 44022 | 0.66 | 0.958119 |
Target: 5'- --gGCgcgGCGGGCggCC-GCcGCGCGGCg -3' miRNA: 3'- acaUGa--UGUUCGa-GGaCGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 68540 | 0.66 | 0.958119 |
Target: 5'- --gGCgcccGCGcGCccCCUGCUGCGCGGg -3' miRNA: 3'- acaUGa---UGUuCGa-GGACGACGCGUCg -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 97842 | 0.66 | 0.958119 |
Target: 5'- cGgggGCgGCGGGCgccgCCgcgGCaGCGCGGCc -3' miRNA: 3'- aCa--UGaUGUUCGa---GGa--CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 117093 | 0.66 | 0.961856 |
Target: 5'- aGUACUcgauCAuGCUCCcGaC-GCGCGGCg -3' miRNA: 3'- aCAUGAu---GUuCGAGGaC-GaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 137956 | 0.66 | 0.961856 |
Target: 5'- cGgcgGCUGCGgcggcGGCUgCggcggcgGCUGCgGCGGCg -3' miRNA: 3'- aCa--UGAUGU-----UCGAgGa------CGACG-CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 118187 | 0.66 | 0.961856 |
Target: 5'- cUGgGCcGCGGGCcccgcgCCUGCcGCGCuGCg -3' miRNA: 3'- -ACaUGaUGUUCGa-----GGACGaCGCGuCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 119262 | 0.66 | 0.94991 |
Target: 5'- --cGCaUGCGcGCUCCUGCU-CGCugGGCg -3' miRNA: 3'- acaUG-AUGUuCGAGGACGAcGCG--UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 14957 | 0.66 | 0.958119 |
Target: 5'- --aGCgaGCGGGCgugCCUGgggcgaCUGCGCGGCc -3' miRNA: 3'- acaUGa-UGUUCGa--GGAC------GACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 80175 | 0.66 | 0.940695 |
Target: 5'- cGUGCcguucgagcgUGCcAGCUCCUGCagGUaCAGCu -3' miRNA: 3'- aCAUG----------AUGuUCGAGGACGa-CGcGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 133369 | 0.66 | 0.940695 |
Target: 5'- --gGCUuc-GGCUgCCUGC-GCGCGGCc -3' miRNA: 3'- acaUGAuguUCGA-GGACGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 132329 | 0.66 | 0.94543 |
Target: 5'- -----cGCGGGgaCCUGCacggggccaUGCGCAGCu -3' miRNA: 3'- acaugaUGUUCgaGGACG---------ACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 134341 | 0.66 | 0.94543 |
Target: 5'- cUGUACcGCAAGCcCCcGCgccgccGCGCGGg -3' miRNA: 3'- -ACAUGaUGUUCGaGGaCGa-----CGCGUCg -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 51902 | 0.66 | 0.94543 |
Target: 5'- --cGCUACAucGC-CCggGC-GCGCAGCg -3' miRNA: 3'- acaUGAUGUu-CGaGGa-CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 15667 | 0.66 | 0.94991 |
Target: 5'- gGUGCUcCAGGaagaucagCCUGCccCGCAGCg -3' miRNA: 3'- aCAUGAuGUUCga------GGACGacGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 69778 | 0.66 | 0.94991 |
Target: 5'- cGgggACUGagccGCUCCcGCggcGCGCGGCg -3' miRNA: 3'- aCa--UGAUguu-CGAGGaCGa--CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 136732 | 0.66 | 0.94991 |
Target: 5'- --cACUGCAAG-UCCcGCUGCuGCAaGCc -3' miRNA: 3'- acaUGAUGUUCgAGGaCGACG-CGU-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 64920 | 0.66 | 0.94991 |
Target: 5'- --aGCgcgGCGuGCUCCUGCUcgccgcccagggGCGCGuGCg -3' miRNA: 3'- acaUGa--UGUuCGAGGACGA------------CGCGU-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 109847 | 0.66 | 0.94991 |
Target: 5'- cGUGCcgUugGuggcGGCUCCUGg-GgGCAGCg -3' miRNA: 3'- aCAUG--AugU----UCGAGGACgaCgCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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