miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 91334 1.13 0.00217
Target:  5'- gUGUACUACAAGCUCCUGCUGCGCAGCg -3'
miRNA:   3'- -ACAUGAUGUUCGAGGACGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 53982 0.76 0.474141
Target:  5'- --aGCgcgGCGAGCUCCaGC-GCGCGGCg -3'
miRNA:   3'- acaUGa--UGUUCGAGGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 121373 0.76 0.493962
Target:  5'- cGUACUGCAGGCgcCCcGCgGCgGCGGCg -3'
miRNA:   3'- aCAUGAUGUUCGa-GGaCGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 37211 0.76 0.504014
Target:  5'- --cGCUACuguGGCUCCcgcggGCuUGCGCGGCg -3'
miRNA:   3'- acaUGAUGu--UCGAGGa----CG-ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 42226 0.75 0.514154
Target:  5'- --cGCcGCGAGCUCCgccGC-GCGCAGCg -3'
miRNA:   3'- acaUGaUGUUCGAGGa--CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 31489 0.75 0.514154
Target:  5'- gGUGCgcgGCGGGCUcucgcaCCUGCU-CGCGGCg -3'
miRNA:   3'- aCAUGa--UGUUCGA------GGACGAcGCGUCG- -5'
23599 5' -53 NC_005261.1 + 29555 0.75 0.534674
Target:  5'- cGgacCUGCAgcuGGCgcgCCUGCUGCaGCGGCg -3'
miRNA:   3'- aCau-GAUGU---UCGa--GGACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 225 0.74 0.58709
Target:  5'- gGUGCUcgcgggccccGCGAGCgggCCcgGCUGCgGCGGCg -3'
miRNA:   3'- aCAUGA----------UGUUCGa--GGa-CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 137908 0.74 0.58709
Target:  5'- gGUGCUcgcgggccccGCGAGCgggCCcgGCUGCgGCGGCg -3'
miRNA:   3'- aCAUGA----------UGUUCGa--GGa-CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 84398 0.74 0.58709
Target:  5'- ---cCU-CGAGCUCCaGCUcGCGCAGCa -3'
miRNA:   3'- acauGAuGUUCGAGGaCGA-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 81796 0.74 0.58709
Target:  5'- -aUAUUGcCAAGCgagCC-GCUGCGCGGCg -3'
miRNA:   3'- acAUGAU-GUUCGa--GGaCGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 10490 0.74 0.597709
Target:  5'- --cGCUGCAccGGCUUUUGC-GCGCGGCc -3'
miRNA:   3'- acaUGAUGU--UCGAGGACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 68255 0.73 0.619022
Target:  5'- cGUggACUGCcuGGCgcgCCUGCgcccGCGCGGCg -3'
miRNA:   3'- aCA--UGAUGu-UCGa--GGACGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133319 0.73 0.651051
Target:  5'- --gGCUGCucgcgcAGCUCCUGCcggcacgcgcGCGCGGCg -3'
miRNA:   3'- acaUGAUGu-----UCGAGGACGa---------CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 131740 0.73 0.660642
Target:  5'- gGUGCUGCAcgcggacGGCacgCCgGCcgGCGCGGCg -3'
miRNA:   3'- aCAUGAUGU-------UCGa--GGaCGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 68500 0.72 0.682931
Target:  5'- aGUGCUucgcgcugauGCAGGCgugCCUGCcgGCGCcGCc -3'
miRNA:   3'- aCAUGA----------UGUUCGa--GGACGa-CGCGuCG- -5'
23599 5' -53 NC_005261.1 + 58022 0.72 0.703972
Target:  5'- aGUGCcGCGgcggcAGCUCCagGgaGCGCGGCc -3'
miRNA:   3'- aCAUGaUGU-----UCGAGGa-CgaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 64586 0.72 0.703972
Target:  5'- cGUAgUGCAcGC-CCaUGCUGCaGCAGCc -3'
miRNA:   3'- aCAUgAUGUuCGaGG-ACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 134503 0.72 0.714398
Target:  5'- cUGcACUACGAGCacagCCUGCgccUGCAGCu -3'
miRNA:   3'- -ACaUGAUGUUCGa---GGACGac-GCGUCG- -5'
23599 5' -53 NC_005261.1 + 23238 0.71 0.755237
Target:  5'- gGUGCaGCGGGCcggCCUGCUcgggcgagaGCuGCAGCa -3'
miRNA:   3'- aCAUGaUGUUCGa--GGACGA---------CG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.