miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 129202 0.71 0.765177
Target:  5'- cGUGgcGCAGcuGCUUCUGCUGgUGCGGCg -3'
miRNA:   3'- aCAUgaUGUU--CGAGGACGAC-GCGUCG- -5'
23599 5' -53 NC_005261.1 + 43629 0.7 0.78466
Target:  5'- cGUGCUGUggGCgCCcGUgugGCGCGGCg -3'
miRNA:   3'- aCAUGAUGuuCGaGGaCGa--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 56091 0.7 0.78466
Target:  5'- --cGCUACuuccagcGGCUCCUGCgcgaGCGGCg -3'
miRNA:   3'- acaUGAUGu------UCGAGGACGacg-CGUCG- -5'
23599 5' -53 NC_005261.1 + 85975 0.7 0.78466
Target:  5'- cGUgAUUGCGcGCUCgaGCUGCGCcGCc -3'
miRNA:   3'- aCA-UGAUGUuCGAGgaCGACGCGuCG- -5'
23599 5' -53 NC_005261.1 + 102406 0.7 0.794183
Target:  5'- --cGCgcCAGcGCUCCUccugccGCUGCGCGGCc -3'
miRNA:   3'- acaUGauGUU-CGAGGA------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 93198 0.7 0.812742
Target:  5'- uUGUACacagccuCGGGCUCCaGCaGCGcCAGCg -3'
miRNA:   3'- -ACAUGau-----GUUCGAGGaCGaCGC-GUCG- -5'
23599 5' -53 NC_005261.1 + 111751 0.7 0.821759
Target:  5'- aGUGCggGC-AGCUCgUGCaccUGCGCuGCg -3'
miRNA:   3'- aCAUGa-UGuUCGAGgACG---ACGCGuCG- -5'
23599 5' -53 NC_005261.1 + 36982 0.69 0.840072
Target:  5'- --cGgUGCGGGCUCCagccggagcccgcggGCUGCGCGGg -3'
miRNA:   3'- acaUgAUGUUCGAGGa--------------CGACGCGUCg -5'
23599 5' -53 NC_005261.1 + 45536 0.69 0.845141
Target:  5'- cGUGCUgccGCAcuacgcuguugcccGGCUgCUGCUG-GCGGCc -3'
miRNA:   3'- aCAUGA---UGU--------------UCGAgGACGACgCGUCG- -5'
23599 5' -53 NC_005261.1 + 38985 0.69 0.847647
Target:  5'- ---cCUGCAGauGUUUCUGCUGUGcCAGCg -3'
miRNA:   3'- acauGAUGUU--CGAGGACGACGC-GUCG- -5'
23599 5' -53 NC_005261.1 + 1464 0.69 0.847647
Target:  5'- cGUGC----GGCUCCaGCaGCGCGGCc -3'
miRNA:   3'- aCAUGauguUCGAGGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 120599 0.69 0.850958
Target:  5'- cGUcgcCUGCGgccucggcgccguggGGCUCCUGCUG-GUGGCg -3'
miRNA:   3'- aCAu--GAUGU---------------UCGAGGACGACgCGUCG- -5'
23599 5' -53 NC_005261.1 + 64109 0.69 0.855861
Target:  5'- aGUGCggcACGGGCggcaCgUGCcGCGCGGCc -3'
miRNA:   3'- aCAUGa--UGUUCGa---GgACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 97751 0.69 0.855861
Target:  5'- --gGCgggGCGGGCUCg-GCgGCGCGGCc -3'
miRNA:   3'- acaUGa--UGUUCGAGgaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 98670 0.69 0.855861
Target:  5'- --gGCgaggGCGGGCUCCgccgggGCcggagGCGCGGCc -3'
miRNA:   3'- acaUGa---UGUUCGAGGa-----CGa----CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 101702 0.69 0.855861
Target:  5'- cGUGgU-CGAagcGCUCCaGCUGCGcCAGCg -3'
miRNA:   3'- aCAUgAuGUU---CGAGGaCGACGC-GUCG- -5'
23599 5' -53 NC_005261.1 + 135462 0.69 0.863855
Target:  5'- --cGCUGCGGGacCUCgUaCUGCGCGGCg -3'
miRNA:   3'- acaUGAUGUUC--GAGgAcGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133017 0.69 0.869315
Target:  5'- --cGCUGCGccacccgcgGGCgcgCCaccgcgcacgcacgUGCUGCGCGGCg -3'
miRNA:   3'- acaUGAUGU---------UCGa--GG--------------ACGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 124409 0.69 0.870855
Target:  5'- gGUACUGCAGcGCcauggCCUGCUucaucgcGCGCcGCc -3'
miRNA:   3'- aCAUGAUGUU-CGa----GGACGA-------CGCGuCG- -5'
23599 5' -53 NC_005261.1 + 65587 0.69 0.870855
Target:  5'- gGU-CcGCGAGCUCCUGCU-CGCcggggucGGCg -3'
miRNA:   3'- aCAuGaUGUUCGAGGACGAcGCG-------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.