miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 131829 0.69 0.871621
Target:  5'- --cGCUugAcgcGGCgcccgCCUGCUGCGgGGUg -3'
miRNA:   3'- acaUGAugU---UCGa----GGACGACGCgUCG- -5'
23599 5' -53 NC_005261.1 + 51812 0.69 0.874663
Target:  5'- cGUGCUGCGGcugguGCgcgCCUGCcUGCaccaccggcgcaaggGCAGCg -3'
miRNA:   3'- aCAUGAUGUU-----CGa--GGACG-ACG---------------CGUCG- -5'
23599 5' -53 NC_005261.1 + 125018 0.68 0.878411
Target:  5'- cGUGCgcuccaGCAGGCUCCgGUgggGCGCugacucgGGCa -3'
miRNA:   3'- aCAUGa-----UGUUCGAGGaCGa--CGCG-------UCG- -5'
23599 5' -53 NC_005261.1 + 110906 0.68 0.879154
Target:  5'- --gACUGCGAcgcgacgguGUUCCUGCcGCGCugGGCa -3'
miRNA:   3'- acaUGAUGUU---------CGAGGACGaCGCG--UCG- -5'
23599 5' -53 NC_005261.1 + 133924 0.68 0.879154
Target:  5'- cUGUACgucGCGuucguGUaCCUGCgccagGCGCGGCg -3'
miRNA:   3'- -ACAUGa--UGUu----CGaGGACGa----CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 69069 0.68 0.879154
Target:  5'- --cGCUAUGccAGUUCCUGCUGuCGC-GCu -3'
miRNA:   3'- acaUGAUGU--UCGAGGACGAC-GCGuCG- -5'
23599 5' -53 NC_005261.1 + 131679 0.68 0.879154
Target:  5'- gGUGCgACc-GC-CCUGC-GCGCGGCg -3'
miRNA:   3'- aCAUGaUGuuCGaGGACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 104800 0.68 0.886447
Target:  5'- cGUGCUccaGCGGG-UCCcGCUcCGCAGCg -3'
miRNA:   3'- aCAUGA---UGUUCgAGGaCGAcGCGUCG- -5'
23599 5' -53 NC_005261.1 + 104663 0.68 0.886447
Target:  5'- --cGCUgGCGGGCgUgUGCUGCgGCAGCg -3'
miRNA:   3'- acaUGA-UGUUCGaGgACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 98177 0.68 0.893496
Target:  5'- gUGUcCUugGAGCcgCCgGggGCGCGGCg -3'
miRNA:   3'- -ACAuGAugUUCGa-GGaCgaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 32018 0.68 0.893496
Target:  5'- aGUACcgGC-AGCgCgUGCUGCcGCGGCu -3'
miRNA:   3'- aCAUGa-UGuUCGaGgACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 89454 0.68 0.900295
Target:  5'- cGUGCUggaguuugacaGCGAGUUCgaGCUGCuGCuGGCc -3'
miRNA:   3'- aCAUGA-----------UGUUCGAGgaCGACG-CG-UCG- -5'
23599 5' -53 NC_005261.1 + 126920 0.68 0.900295
Target:  5'- gGU-CUGCAuccGUUCCaGCaGCGCGGCc -3'
miRNA:   3'- aCAuGAUGUu--CGAGGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 89719 0.68 0.900295
Target:  5'- aUGUACcGCAcggccguggauaAGCUCaaGCUGCcCAGCu -3'
miRNA:   3'- -ACAUGaUGU------------UCGAGgaCGACGcGUCG- -5'
23599 5' -53 NC_005261.1 + 43473 0.68 0.902944
Target:  5'- gGUGCUggcggaguGCGAGgccuucgcggcggacCUCCUgcGCUGCGcCAGCg -3'
miRNA:   3'- aCAUGA--------UGUUC---------------GAGGA--CGACGC-GUCG- -5'
23599 5' -53 NC_005261.1 + 90018 0.68 0.904904
Target:  5'- -cUGCUGCGccuGGCccgggagcggggcuUCCUGCUGCcggacagccaGCGGCg -3'
miRNA:   3'- acAUGAUGU---UCG--------------AGGACGACG----------CGUCG- -5'
23599 5' -53 NC_005261.1 + 59040 0.68 0.906841
Target:  5'- gGUGCcgccgcGCGAGCUCa-GCgcGCGCGGCc -3'
miRNA:   3'- aCAUGa-----UGUUCGAGgaCGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 122575 0.68 0.906841
Target:  5'- --cGCUGCGcAGCUCC-GCcGCaGCGGCc -3'
miRNA:   3'- acaUGAUGU-UCGAGGaCGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 62124 0.68 0.906841
Target:  5'- cGUcCUGCAGGC-CCUGCgucaGCAGg -3'
miRNA:   3'- aCAuGAUGUUCGaGGACGacg-CGUCg -5'
23599 5' -53 NC_005261.1 + 46455 0.68 0.906841
Target:  5'- cGUGCgugaACAGGC-CCUcgaaGCgcagGUGCAGCu -3'
miRNA:   3'- aCAUGa---UGUUCGaGGA----CGa---CGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.