miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 57256 0.66 0.954139
Target:  5'- cGUGCcgccgcACAcGCUCC-GCaucGCGCGGCa -3'
miRNA:   3'- aCAUGa-----UGUuCGAGGaCGa--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 103289 0.66 0.953727
Target:  5'- gGUGCcGCGcgcagccccgcgaAGC-CCUGCaGCgGCAGCa -3'
miRNA:   3'- aCAUGaUGU-------------UCGaGGACGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 15667 0.66 0.94991
Target:  5'- gGUGCUcCAGGaagaucagCCUGCccCGCAGCg -3'
miRNA:   3'- aCAUGAuGUUCga------GGACGacGCGUCG- -5'
23599 5' -53 NC_005261.1 + 69778 0.66 0.94991
Target:  5'- cGgggACUGagccGCUCCcGCggcGCGCGGCg -3'
miRNA:   3'- aCa--UGAUguu-CGAGGaCGa--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 136732 0.66 0.94991
Target:  5'- --cACUGCAAG-UCCcGCUGCuGCAaGCc -3'
miRNA:   3'- acaUGAUGUUCgAGGaCGACG-CGU-CG- -5'
23599 5' -53 NC_005261.1 + 64920 0.66 0.94991
Target:  5'- --aGCgcgGCGuGCUCCUGCUcgccgcccagggGCGCGuGCg -3'
miRNA:   3'- acaUGa--UGUuCGAGGACGA------------CGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 109847 0.66 0.94991
Target:  5'- cGUGCcgUugGuggcGGCUCCUGg-GgGCAGCg -3'
miRNA:   3'- aCAUG--AugU----UCGAGGACgaCgCGUCG- -5'
23599 5' -53 NC_005261.1 + 119262 0.66 0.94991
Target:  5'- --cGCaUGCGcGCUCCUGCU-CGCugGGCg -3'
miRNA:   3'- acaUG-AUGUuCGAGGACGAcGCG--UCG- -5'
23599 5' -53 NC_005261.1 + 43693 0.66 0.94543
Target:  5'- --cACgGCGAGgUCCUggccugccacgcGCUGCGCgAGCa -3'
miRNA:   3'- acaUGaUGUUCgAGGA------------CGACGCG-UCG- -5'
23599 5' -53 NC_005261.1 + 44734 0.66 0.94543
Target:  5'- --cGCUGCAgcugGGCcCCgaGCUGCGC-GCg -3'
miRNA:   3'- acaUGAUGU----UCGaGGa-CGACGCGuCG- -5'
23599 5' -53 NC_005261.1 + 52976 0.66 0.94543
Target:  5'- gGUGCggcgccgGCAGGCgggggcggcgCCcagGCgucgGCGCAGCu -3'
miRNA:   3'- aCAUGa------UGUUCGa---------GGa--CGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 73770 0.66 0.94543
Target:  5'- ---uCUACgAGGCgcuggCCUGCgacgugcGCGCGGCg -3'
miRNA:   3'- acauGAUG-UUCGa----GGACGa------CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 132329 0.66 0.94543
Target:  5'- -----cGCGGGgaCCUGCacggggccaUGCGCAGCu -3'
miRNA:   3'- acaugaUGUUCgaGGACG---------ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 134341 0.66 0.94543
Target:  5'- cUGUACcGCAAGCcCCcGCgccgccGCGCGGg -3'
miRNA:   3'- -ACAUGaUGUUCGaGGaCGa-----CGCGUCg -5'
23599 5' -53 NC_005261.1 + 51902 0.66 0.94543
Target:  5'- --cGCUACAucGC-CCggGC-GCGCAGCg -3'
miRNA:   3'- acaUGAUGUu-CGaGGa-CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133788 0.66 0.94262
Target:  5'- cGUGCggcGCAucccgcccgGGCUgCUcgacggcgacgaggcGCUGCGCGGCc -3'
miRNA:   3'- aCAUGa--UGU---------UCGAgGA---------------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 121460 0.66 0.940695
Target:  5'- cGU-CgaugGCGAGCUCCUcggcguaccgGCUGCcgccacgggGCGGCg -3'
miRNA:   3'- aCAuGa---UGUUCGAGGA----------CGACG---------CGUCG- -5'
23599 5' -53 NC_005261.1 + 48789 0.66 0.940695
Target:  5'- --gGCgaucGCcGGCUCCgugagGCcgUGCGCGGCg -3'
miRNA:   3'- acaUGa---UGuUCGAGGa----CG--ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133369 0.66 0.940695
Target:  5'- --gGCUuc-GGCUgCCUGC-GCGCGGCc -3'
miRNA:   3'- acaUGAuguUCGA-GGACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 80175 0.66 0.940695
Target:  5'- cGUGCcguucgagcgUGCcAGCUCCUGCagGUaCAGCu -3'
miRNA:   3'- aCAUG----------AUGuUCGAGGACGa-CGcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.