miRNA display CGI


Results 41 - 60 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 121460 0.66 0.940695
Target:  5'- cGU-CgaugGCGAGCUCCUcggcguaccgGCUGCcgccacgggGCGGCg -3'
miRNA:   3'- aCAuGa---UGUUCGAGGA----------CGACG---------CGUCG- -5'
23599 5' -53 NC_005261.1 + 121523 0.66 0.940695
Target:  5'- cGU-CgaugGCGAGCUCCUcgucGCUGuCGgAGCc -3'
miRNA:   3'- aCAuGa---UGUUCGAGGA----CGAC-GCgUCG- -5'
23599 5' -53 NC_005261.1 + 20549 0.67 0.935702
Target:  5'- -cUGCUGgAcguGGCggCggGCUGCGCAGCg -3'
miRNA:   3'- acAUGAUgU---UCGa-GgaCGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 44209 0.67 0.93045
Target:  5'- --aGCUGCAGGCggCCcgGgaGCGCGcGCu -3'
miRNA:   3'- acaUGAUGUUCGa-GGa-CgaCGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 49577 0.67 0.93045
Target:  5'- cGUGaacACGGGCUCgggGC-GCGCGGCg -3'
miRNA:   3'- aCAUga-UGUUCGAGga-CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 72517 0.67 0.93045
Target:  5'- --cGCcGCAucCUCCUuggcggcucGCUGCGCGGCa -3'
miRNA:   3'- acaUGaUGUucGAGGA---------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 98517 0.67 0.93045
Target:  5'- cGUACggGCAGGCgcgagauccggCCgguagGCUGCGCccGCg -3'
miRNA:   3'- aCAUGa-UGUUCGa----------GGa----CGACGCGu-CG- -5'
23599 5' -53 NC_005261.1 + 129708 0.67 0.93045
Target:  5'- gGgcCggagGCAGGC-CCgccgGCUGCaGCGGCa -3'
miRNA:   3'- aCauGa---UGUUCGaGGa---CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 134168 0.67 0.92991
Target:  5'- --gGCUGCu-GCUCCcgcUGCUugcggagggccugGCGCGGCu -3'
miRNA:   3'- acaUGAUGuuCGAGG---ACGA-------------CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 38940 0.67 0.924937
Target:  5'- --gGCggcCGGGCgggCCgcggcgcgcggGCUGCGCAGCa -3'
miRNA:   3'- acaUGau-GUUCGa--GGa----------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 30023 0.67 0.924937
Target:  5'- gGUGCUcucggcugcaGCGGGCcgcggCCUGCcgGCcGCGGCc -3'
miRNA:   3'- aCAUGA----------UGUUCGa----GGACGa-CG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 33713 0.67 0.919164
Target:  5'- --cGCUGCAcgaggGGCggugggggCCUGCcccucGCGCGGCg -3'
miRNA:   3'- acaUGAUGU-----UCGa-------GGACGa----CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 19068 0.67 0.918573
Target:  5'- --gGCUGCGcGGCUCUcggcgcgUGCuUGCGUGGCg -3'
miRNA:   3'- acaUGAUGU-UCGAGG-------ACG-ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 30101 0.67 0.913132
Target:  5'- cGUGCUcCGGGCagcugagCUGCUugGCGCGGCc -3'
miRNA:   3'- aCAUGAuGUUCGag-----GACGA--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 56275 0.67 0.913132
Target:  5'- gGUACUGCGAGCUggcgCC-GCUGUucGCcGCc -3'
miRNA:   3'- aCAUGAUGUUCGA----GGaCGACG--CGuCG- -5'
23599 5' -53 NC_005261.1 + 69503 0.67 0.913132
Target:  5'- cUGUACgccggcgGCGGGCUgCCggaGCUGgCGCGGg -3'
miRNA:   3'- -ACAUGa------UGUUCGA-GGa--CGAC-GCGUCg -5'
23599 5' -53 NC_005261.1 + 104945 0.67 0.913132
Target:  5'- --cGCgcCAAGCUCC-GCcGCGCAGg -3'
miRNA:   3'- acaUGauGUUCGAGGaCGaCGCGUCg -5'
23599 5' -53 NC_005261.1 + 62124 0.68 0.906841
Target:  5'- cGUcCUGCAGGC-CCUGCgucaGCAGg -3'
miRNA:   3'- aCAuGAUGUUCGaGGACGacg-CGUCg -5'
23599 5' -53 NC_005261.1 + 46455 0.68 0.906841
Target:  5'- cGUGCgugaACAGGC-CCUcgaaGCgcagGUGCAGCu -3'
miRNA:   3'- aCAUGa---UGUUCGaGGA----CGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 42378 0.68 0.906841
Target:  5'- cGUACUgguGCcGGC-CCaGCUGCGCcuGCa -3'
miRNA:   3'- aCAUGA---UGuUCGaGGaCGACGCGu-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.