miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 225 0.74 0.58709
Target:  5'- gGUGCUcgcgggccccGCGAGCgggCCcgGCUGCgGCGGCg -3'
miRNA:   3'- aCAUGA----------UGUUCGa--GGa-CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 273 0.66 0.961856
Target:  5'- cGgcgGCUGCGgcggcGGCUgCggcggcgGCUGCgGCGGCg -3'
miRNA:   3'- aCa--UGAUGU-----UCGAgGa------CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 1464 0.69 0.847647
Target:  5'- cGUGC----GGCUCCaGCaGCGCGGCc -3'
miRNA:   3'- aCAUGauguUCGAGGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 7882 0.66 0.961856
Target:  5'- --gGCaGCGAGCggcUCUGUuccgGCGCGGCg -3'
miRNA:   3'- acaUGaUGUUCGa--GGACGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 10490 0.74 0.597709
Target:  5'- --cGCUGCAccGGCUUUUGC-GCGCGGCc -3'
miRNA:   3'- acaUGAUGU--UCGAGGACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 14957 0.66 0.958119
Target:  5'- --aGCgaGCGGGCgugCCUGgggcgaCUGCGCGGCc -3'
miRNA:   3'- acaUGa-UGUUCGa--GGAC------GACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 15667 0.66 0.94991
Target:  5'- gGUGCUcCAGGaagaucagCCUGCccCGCAGCg -3'
miRNA:   3'- aCAUGAuGUUCga------GGACGacGCGUCG- -5'
23599 5' -53 NC_005261.1 + 19068 0.67 0.918573
Target:  5'- --gGCUGCGcGGCUCUcggcgcgUGCuUGCGUGGCg -3'
miRNA:   3'- acaUGAUGU-UCGAGG-------ACG-ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 20549 0.67 0.935702
Target:  5'- -cUGCUGgAcguGGCggCggGCUGCGCAGCg -3'
miRNA:   3'- acAUGAUgU---UCGa-GgaCGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 23238 0.71 0.755237
Target:  5'- gGUGCaGCGGGCcggCCUGCUcgggcgagaGCuGCAGCa -3'
miRNA:   3'- aCAUGaUGUUCGa--GGACGA---------CG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 29555 0.75 0.534674
Target:  5'- cGgacCUGCAgcuGGCgcgCCUGCUGCaGCGGCg -3'
miRNA:   3'- aCau-GAUGU---UCGa--GGACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 30023 0.67 0.924937
Target:  5'- gGUGCUcucggcugcaGCGGGCcgcggCCUGCcgGCcGCGGCc -3'
miRNA:   3'- aCAUGA----------UGUUCGa----GGACGa-CG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 30101 0.67 0.913132
Target:  5'- cGUGCUcCGGGCagcugagCUGCUugGCGCGGCc -3'
miRNA:   3'- aCAUGAuGUUCGag-----GACGA--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 31489 0.75 0.514154
Target:  5'- gGUGCgcgGCGGGCUcucgcaCCUGCU-CGCGGCg -3'
miRNA:   3'- aCAUGa--UGUUCGA------GGACGAcGCGUCG- -5'
23599 5' -53 NC_005261.1 + 32018 0.68 0.893496
Target:  5'- aGUACcgGC-AGCgCgUGCUGCcGCGGCu -3'
miRNA:   3'- aCAUGa-UGuUCGaGgACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 33713 0.67 0.919164
Target:  5'- --cGCUGCAcgaggGGCggugggggCCUGCcccucGCGCGGCg -3'
miRNA:   3'- acaUGAUGU-----UCGa-------GGACGa----CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 36982 0.69 0.840072
Target:  5'- --cGgUGCGGGCUCCagccggagcccgcggGCUGCGCGGg -3'
miRNA:   3'- acaUgAUGUUCGAGGa--------------CGACGCGUCg -5'
23599 5' -53 NC_005261.1 + 37211 0.76 0.504014
Target:  5'- --cGCUACuguGGCUCCcgcggGCuUGCGCGGCg -3'
miRNA:   3'- acaUGAUGu--UCGAGGa----CG-ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 38940 0.67 0.924937
Target:  5'- --gGCggcCGGGCgggCCgcggcgcgcggGCUGCGCAGCa -3'
miRNA:   3'- acaUGau-GUUCGa--GGa----------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 38985 0.69 0.847647
Target:  5'- ---cCUGCAGauGUUUCUGCUGUGcCAGCg -3'
miRNA:   3'- acauGAUGUU--CGAGGACGACGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.