miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 39074 0.66 0.958119
Target:  5'- aGUACUACAcccGCUCCU-CgGacgGCGGCa -3'
miRNA:   3'- aCAUGAUGUu--CGAGGAcGaCg--CGUCG- -5'
23599 5' -53 NC_005261.1 + 42226 0.75 0.514154
Target:  5'- --cGCcGCGAGCUCCgccGC-GCGCAGCg -3'
miRNA:   3'- acaUGaUGUUCGAGGa--CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 42378 0.68 0.906841
Target:  5'- cGUACUgguGCcGGC-CCaGCUGCGCcuGCa -3'
miRNA:   3'- aCAUGA---UGuUCGaGGaCGACGCGu-CG- -5'
23599 5' -53 NC_005261.1 + 43473 0.68 0.902944
Target:  5'- gGUGCUggcggaguGCGAGgccuucgcggcggacCUCCUgcGCUGCGcCAGCg -3'
miRNA:   3'- aCAUGA--------UGUUC---------------GAGGA--CGACGC-GUCG- -5'
23599 5' -53 NC_005261.1 + 43629 0.7 0.78466
Target:  5'- cGUGCUGUggGCgCCcGUgugGCGCGGCg -3'
miRNA:   3'- aCAUGAUGuuCGaGGaCGa--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 43693 0.66 0.94543
Target:  5'- --cACgGCGAGgUCCUggccugccacgcGCUGCGCgAGCa -3'
miRNA:   3'- acaUGaUGUUCgAGGA------------CGACGCG-UCG- -5'
23599 5' -53 NC_005261.1 + 44022 0.66 0.958119
Target:  5'- --gGCgcgGCGGGCggCC-GCcGCGCGGCg -3'
miRNA:   3'- acaUGa--UGUUCGa-GGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 44209 0.67 0.93045
Target:  5'- --aGCUGCAGGCggCCcgGgaGCGCGcGCu -3'
miRNA:   3'- acaUGAUGUUCGa-GGa-CgaCGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 44734 0.66 0.94543
Target:  5'- --cGCUGCAgcugGGCcCCgaGCUGCGC-GCg -3'
miRNA:   3'- acaUGAUGU----UCGaGGa-CGACGCGuCG- -5'
23599 5' -53 NC_005261.1 + 45536 0.69 0.845141
Target:  5'- cGUGCUgccGCAcuacgcuguugcccGGCUgCUGCUG-GCGGCc -3'
miRNA:   3'- aCAUGA---UGU--------------UCGAgGACGACgCGUCG- -5'
23599 5' -53 NC_005261.1 + 46455 0.68 0.906841
Target:  5'- cGUGCgugaACAGGC-CCUcgaaGCgcagGUGCAGCu -3'
miRNA:   3'- aCAUGa---UGUUCGaGGA----CGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 48388 0.66 0.954139
Target:  5'- cUGUACUugGGGCUCgCgaaGC-GCGCcuuguGGCu -3'
miRNA:   3'- -ACAUGAugUUCGAG-Ga--CGaCGCG-----UCG- -5'
23599 5' -53 NC_005261.1 + 48503 0.66 0.940695
Target:  5'- cGUGCUugcGCAGGUUCUUGaC-GCGCGcGCc -3'
miRNA:   3'- aCAUGA---UGUUCGAGGAC-GaCGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 48789 0.66 0.940695
Target:  5'- --gGCgaucGCcGGCUCCgugagGCcgUGCGCGGCg -3'
miRNA:   3'- acaUGa---UGuUCGAGGa----CG--ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 49577 0.67 0.93045
Target:  5'- cGUGaacACGGGCUCgggGC-GCGCGGCg -3'
miRNA:   3'- aCAUga-UGUUCGAGga-CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 51812 0.69 0.874663
Target:  5'- cGUGCUGCGGcugguGCgcgCCUGCcUGCaccaccggcgcaaggGCAGCg -3'
miRNA:   3'- aCAUGAUGUU-----CGa--GGACG-ACG---------------CGUCG- -5'
23599 5' -53 NC_005261.1 + 51902 0.66 0.94543
Target:  5'- --cGCUACAucGC-CCggGC-GCGCAGCg -3'
miRNA:   3'- acaUGAUGUu-CGaGGa-CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 52976 0.66 0.94543
Target:  5'- gGUGCggcgccgGCAGGCgggggcggcgCCcagGCgucgGCGCAGCu -3'
miRNA:   3'- aCAUGa------UGUUCGa---------GGa--CGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 53982 0.76 0.474141
Target:  5'- --aGCgcgGCGAGCUCCaGC-GCGCGGCg -3'
miRNA:   3'- acaUGa--UGUUCGAGGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 55151 0.66 0.954139
Target:  5'- aUGUGCgcgcGCGAGCgccgCCgccggcgGCUcGCGgGGCg -3'
miRNA:   3'- -ACAUGa---UGUUCGa---GGa------CGA-CGCgUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.