miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 56091 0.7 0.78466
Target:  5'- --cGCUACuuccagcGGCUCCUGCgcgaGCGGCg -3'
miRNA:   3'- acaUGAUGu------UCGAGGACGacg-CGUCG- -5'
23599 5' -53 NC_005261.1 + 56275 0.67 0.913132
Target:  5'- gGUACUGCGAGCUggcgCC-GCUGUucGCcGCc -3'
miRNA:   3'- aCAUGAUGUUCGA----GGaCGACG--CGuCG- -5'
23599 5' -53 NC_005261.1 + 56813 0.66 0.961856
Target:  5'- --gGCcACGGuGUUCCUGgUGCcGCGGCg -3'
miRNA:   3'- acaUGaUGUU-CGAGGACgACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 57256 0.66 0.954139
Target:  5'- cGUGCcgccgcACAcGCUCC-GCaucGCGCGGCa -3'
miRNA:   3'- aCAUGa-----UGUuCGAGGaCGa--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 58022 0.72 0.703972
Target:  5'- aGUGCcGCGgcggcAGCUCCagGgaGCGCGGCc -3'
miRNA:   3'- aCAUGaUGU-----UCGAGGa-CgaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 59040 0.68 0.906841
Target:  5'- gGUGCcgccgcGCGAGCUCa-GCgcGCGCGGCc -3'
miRNA:   3'- aCAUGa-----UGUUCGAGgaCGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 62124 0.68 0.906841
Target:  5'- cGUcCUGCAGGC-CCUGCgucaGCAGg -3'
miRNA:   3'- aCAuGAUGUUCGaGGACGacg-CGUCg -5'
23599 5' -53 NC_005261.1 + 64109 0.69 0.855861
Target:  5'- aGUGCggcACGGGCggcaCgUGCcGCGCGGCc -3'
miRNA:   3'- aCAUGa--UGUUCGa---GgACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 64586 0.72 0.703972
Target:  5'- cGUAgUGCAcGC-CCaUGCUGCaGCAGCc -3'
miRNA:   3'- aCAUgAUGUuCGaGG-ACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 64920 0.66 0.94991
Target:  5'- --aGCgcgGCGuGCUCCUGCUcgccgcccagggGCGCGuGCg -3'
miRNA:   3'- acaUGa--UGUuCGAGGACGA------------CGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 65587 0.69 0.870855
Target:  5'- gGU-CcGCGAGCUCCUGCU-CGCcggggucGGCg -3'
miRNA:   3'- aCAuGaUGUUCGAGGACGAcGCG-------UCG- -5'
23599 5' -53 NC_005261.1 + 68255 0.73 0.619022
Target:  5'- cGUggACUGCcuGGCgcgCCUGCgcccGCGCGGCg -3'
miRNA:   3'- aCA--UGAUGu-UCGa--GGACGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 68500 0.72 0.682931
Target:  5'- aGUGCUucgcgcugauGCAGGCgugCCUGCcgGCGCcGCc -3'
miRNA:   3'- aCAUGA----------UGUUCGa--GGACGa-CGCGuCG- -5'
23599 5' -53 NC_005261.1 + 68540 0.66 0.958119
Target:  5'- --gGCgcccGCGcGCccCCUGCUGCGCGGg -3'
miRNA:   3'- acaUGa---UGUuCGa-GGACGACGCGUCg -5'
23599 5' -53 NC_005261.1 + 69069 0.68 0.879154
Target:  5'- --cGCUAUGccAGUUCCUGCUGuCGC-GCu -3'
miRNA:   3'- acaUGAUGU--UCGAGGACGAC-GCGuCG- -5'
23599 5' -53 NC_005261.1 + 69503 0.67 0.913132
Target:  5'- cUGUACgccggcgGCGGGCUgCCggaGCUGgCGCGGg -3'
miRNA:   3'- -ACAUGa------UGUUCGA-GGa--CGAC-GCGUCg -5'
23599 5' -53 NC_005261.1 + 69778 0.66 0.94991
Target:  5'- cGgggACUGagccGCUCCcGCggcGCGCGGCg -3'
miRNA:   3'- aCa--UGAUguu-CGAGGaCGa--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 72517 0.67 0.93045
Target:  5'- --cGCcGCAucCUCCUuggcggcucGCUGCGCGGCa -3'
miRNA:   3'- acaUGaUGUucGAGGA---------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 73770 0.66 0.94543
Target:  5'- ---uCUACgAGGCgcuggCCUGCgacgugcGCGCGGCg -3'
miRNA:   3'- acauGAUG-UUCGa----GGACGa------CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 80175 0.66 0.940695
Target:  5'- cGUGCcguucgagcgUGCcAGCUCCUGCagGUaCAGCu -3'
miRNA:   3'- aCAUG----------AUGuUCGAGGACGa-CGcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.