Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 5' | -53 | NC_005261.1 | + | 81796 | 0.74 | 0.58709 |
Target: 5'- -aUAUUGcCAAGCgagCC-GCUGCGCGGCg -3' miRNA: 3'- acAUGAU-GUUCGa--GGaCGACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 83134 | 0.66 | 0.958119 |
Target: 5'- --cGCgcgGCAcGC-CCUGCagGUGCGGCa -3' miRNA: 3'- acaUGa--UGUuCGaGGACGa-CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 84398 | 0.74 | 0.58709 |
Target: 5'- ---cCU-CGAGCUCCaGCUcGCGCAGCa -3' miRNA: 3'- acauGAuGUUCGAGGaCGA-CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 85975 | 0.7 | 0.78466 |
Target: 5'- cGUgAUUGCGcGCUCgaGCUGCGCcGCc -3' miRNA: 3'- aCA-UGAUGUuCGAGgaCGACGCGuCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 89454 | 0.68 | 0.900295 |
Target: 5'- cGUGCUggaguuugacaGCGAGUUCgaGCUGCuGCuGGCc -3' miRNA: 3'- aCAUGA-----------UGUUCGAGgaCGACG-CG-UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 89719 | 0.68 | 0.900295 |
Target: 5'- aUGUACcGCAcggccguggauaAGCUCaaGCUGCcCAGCu -3' miRNA: 3'- -ACAUGaUGU------------UCGAGgaCGACGcGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 90018 | 0.68 | 0.904904 |
Target: 5'- -cUGCUGCGccuGGCccgggagcggggcuUCCUGCUGCcggacagccaGCGGCg -3' miRNA: 3'- acAUGAUGU---UCG--------------AGGACGACG----------CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 91334 | 1.13 | 0.00217 |
Target: 5'- gUGUACUACAAGCUCCUGCUGCGCAGCg -3' miRNA: 3'- -ACAUGAUGUUCGAGGACGACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 93198 | 0.7 | 0.812742 |
Target: 5'- uUGUACacagccuCGGGCUCCaGCaGCGcCAGCg -3' miRNA: 3'- -ACAUGau-----GUUCGAGGaCGaCGC-GUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 97751 | 0.69 | 0.855861 |
Target: 5'- --gGCgggGCGGGCUCg-GCgGCGCGGCc -3' miRNA: 3'- acaUGa--UGUUCGAGgaCGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 97842 | 0.66 | 0.958119 |
Target: 5'- cGgggGCgGCGGGCgccgCCgcgGCaGCGCGGCc -3' miRNA: 3'- aCa--UGaUGUUCGa---GGa--CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 98177 | 0.68 | 0.893496 |
Target: 5'- gUGUcCUugGAGCcgCCgGggGCGCGGCg -3' miRNA: 3'- -ACAuGAugUUCGa-GGaCgaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 98517 | 0.67 | 0.93045 |
Target: 5'- cGUACggGCAGGCgcgagauccggCCgguagGCUGCGCccGCg -3' miRNA: 3'- aCAUGa-UGUUCGa----------GGa----CGACGCGu-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 98670 | 0.69 | 0.855861 |
Target: 5'- --gGCgaggGCGGGCUCCgccgggGCcggagGCGCGGCc -3' miRNA: 3'- acaUGa---UGUUCGAGGa-----CGa----CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 101702 | 0.69 | 0.855861 |
Target: 5'- cGUGgU-CGAagcGCUCCaGCUGCGcCAGCg -3' miRNA: 3'- aCAUgAuGUU---CGAGGaCGACGC-GUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 102406 | 0.7 | 0.794183 |
Target: 5'- --cGCgcCAGcGCUCCUccugccGCUGCGCGGCc -3' miRNA: 3'- acaUGauGUU-CGAGGA------CGACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 103289 | 0.66 | 0.953727 |
Target: 5'- gGUGCcGCGcgcagccccgcgaAGC-CCUGCaGCgGCAGCa -3' miRNA: 3'- aCAUGaUGU-------------UCGaGGACGaCG-CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 104663 | 0.68 | 0.886447 |
Target: 5'- --cGCUgGCGGGCgUgUGCUGCgGCAGCg -3' miRNA: 3'- acaUGA-UGUUCGaGgACGACG-CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 104800 | 0.68 | 0.886447 |
Target: 5'- cGUGCUccaGCGGG-UCCcGCUcCGCAGCg -3' miRNA: 3'- aCAUGA---UGUUCgAGGaCGAcGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 104945 | 0.67 | 0.913132 |
Target: 5'- --cGCgcCAAGCUCC-GCcGCGCAGg -3' miRNA: 3'- acaUGauGUUCGAGGaCGaCGCGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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