miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 107628 0.66 0.954139
Target:  5'- cGUGCgcgggaacuCGAGCgCCcgcGCUGCGCGcGCa -3'
miRNA:   3'- aCAUGau-------GUUCGaGGa--CGACGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 109204 0.66 0.958119
Target:  5'- cGUGC-GCAGGCgCUcGUagGCGCGGCa -3'
miRNA:   3'- aCAUGaUGUUCGaGGaCGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 109847 0.66 0.94991
Target:  5'- cGUGCcgUugGuggcGGCUCCUGg-GgGCAGCg -3'
miRNA:   3'- aCAUG--AugU----UCGAGGACgaCgCGUCG- -5'
23599 5' -53 NC_005261.1 + 110906 0.68 0.879154
Target:  5'- --gACUGCGAcgcgacgguGUUCCUGCcGCGCugGGCa -3'
miRNA:   3'- acaUGAUGUU---------CGAGGACGaCGCG--UCG- -5'
23599 5' -53 NC_005261.1 + 111751 0.7 0.821759
Target:  5'- aGUGCggGC-AGCUCgUGCaccUGCGCuGCg -3'
miRNA:   3'- aCAUGa-UGuUCGAGgACG---ACGCGuCG- -5'
23599 5' -53 NC_005261.1 + 117093 0.66 0.961856
Target:  5'- aGUACUcgauCAuGCUCCcGaC-GCGCGGCg -3'
miRNA:   3'- aCAUGAu---GUuCGAGGaC-GaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 118187 0.66 0.961856
Target:  5'- cUGgGCcGCGGGCcccgcgCCUGCcGCGCuGCg -3'
miRNA:   3'- -ACaUGaUGUUCGa-----GGACGaCGCGuCG- -5'
23599 5' -53 NC_005261.1 + 119262 0.66 0.94991
Target:  5'- --cGCaUGCGcGCUCCUGCU-CGCugGGCg -3'
miRNA:   3'- acaUG-AUGUuCGAGGACGAcGCG--UCG- -5'
23599 5' -53 NC_005261.1 + 120599 0.69 0.850958
Target:  5'- cGUcgcCUGCGgccucggcgccguggGGCUCCUGCUG-GUGGCg -3'
miRNA:   3'- aCAu--GAUGU---------------UCGAGGACGACgCGUCG- -5'
23599 5' -53 NC_005261.1 + 121373 0.76 0.493962
Target:  5'- cGUACUGCAGGCgcCCcGCgGCgGCGGCg -3'
miRNA:   3'- aCAUGAUGUUCGa-GGaCGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 121460 0.66 0.940695
Target:  5'- cGU-CgaugGCGAGCUCCUcggcguaccgGCUGCcgccacgggGCGGCg -3'
miRNA:   3'- aCAuGa---UGUUCGAGGA----------CGACG---------CGUCG- -5'
23599 5' -53 NC_005261.1 + 121523 0.66 0.940695
Target:  5'- cGU-CgaugGCGAGCUCCUcgucGCUGuCGgAGCc -3'
miRNA:   3'- aCAuGa---UGUUCGAGGA----CGAC-GCgUCG- -5'
23599 5' -53 NC_005261.1 + 122386 0.68 0.906841
Target:  5'- cGgcCUGgGGGCgCUUGCcaagcuUGCGCAGCa -3'
miRNA:   3'- aCauGAUgUUCGaGGACG------ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 122575 0.68 0.906841
Target:  5'- --cGCUGCGcAGCUCC-GCcGCaGCGGCc -3'
miRNA:   3'- acaUGAUGU-UCGAGGaCGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 124409 0.69 0.870855
Target:  5'- gGUACUGCAGcGCcauggCCUGCUucaucgcGCGCcGCc -3'
miRNA:   3'- aCAUGAUGUU-CGa----GGACGA-------CGCGuCG- -5'
23599 5' -53 NC_005261.1 + 125018 0.68 0.878411
Target:  5'- cGUGCgcuccaGCAGGCUCCgGUgggGCGCugacucgGGCa -3'
miRNA:   3'- aCAUGa-----UGUUCGAGGaCGa--CGCG-------UCG- -5'
23599 5' -53 NC_005261.1 + 126920 0.68 0.900295
Target:  5'- gGU-CUGCAuccGUUCCaGCaGCGCGGCc -3'
miRNA:   3'- aCAuGAUGUu--CGAGGaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 129202 0.71 0.765177
Target:  5'- cGUGgcGCAGcuGCUUCUGCUGgUGCGGCg -3'
miRNA:   3'- aCAUgaUGUU--CGAGGACGAC-GCGUCG- -5'
23599 5' -53 NC_005261.1 + 129708 0.67 0.93045
Target:  5'- gGgcCggagGCAGGC-CCgccgGCUGCaGCGGCa -3'
miRNA:   3'- aCauGa---UGUUCGaGGa---CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 131679 0.68 0.879154
Target:  5'- gGUGCgACc-GC-CCUGC-GCGCGGCg -3'
miRNA:   3'- aCAUGaUGuuCGaGGACGaCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.