miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 131740 0.73 0.660642
Target:  5'- gGUGCUGCAcgcggacGGCacgCCgGCcgGCGCGGCg -3'
miRNA:   3'- aCAUGAUGU-------UCGa--GGaCGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 131829 0.69 0.871621
Target:  5'- --cGCUugAcgcGGCgcccgCCUGCUGCGgGGUg -3'
miRNA:   3'- acaUGAugU---UCGa----GGACGACGCgUCG- -5'
23599 5' -53 NC_005261.1 + 132329 0.66 0.94543
Target:  5'- -----cGCGGGgaCCUGCacggggccaUGCGCAGCu -3'
miRNA:   3'- acaugaUGUUCgaGGACG---------ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133017 0.69 0.869315
Target:  5'- --cGCUGCGccacccgcgGGCgcgCCaccgcgcacgcacgUGCUGCGCGGCg -3'
miRNA:   3'- acaUGAUGU---------UCGa--GG--------------ACGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133319 0.73 0.651051
Target:  5'- --gGCUGCucgcgcAGCUCCUGCcggcacgcgcGCGCGGCg -3'
miRNA:   3'- acaUGAUGu-----UCGAGGACGa---------CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133369 0.66 0.940695
Target:  5'- --gGCUuc-GGCUgCCUGC-GCGCGGCc -3'
miRNA:   3'- acaUGAuguUCGA-GGACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133788 0.66 0.94262
Target:  5'- cGUGCggcGCAucccgcccgGGCUgCUcgacggcgacgaggcGCUGCGCGGCc -3'
miRNA:   3'- aCAUGa--UGU---------UCGAgGA---------------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133924 0.68 0.879154
Target:  5'- cUGUACgucGCGuucguGUaCCUGCgccagGCGCGGCg -3'
miRNA:   3'- -ACAUGa--UGUu----CGaGGACGa----CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 134168 0.67 0.92991
Target:  5'- --gGCUGCu-GCUCCcgcUGCUugcggagggccugGCGCGGCu -3'
miRNA:   3'- acaUGAUGuuCGAGG---ACGA-------------CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 134341 0.66 0.94543
Target:  5'- cUGUACcGCAAGCcCCcGCgccgccGCGCGGg -3'
miRNA:   3'- -ACAUGaUGUUCGaGGaCGa-----CGCGUCg -5'
23599 5' -53 NC_005261.1 + 134418 0.66 0.961856
Target:  5'- cGUgaACUGCu-GCUCCacgcUGCUcGCGgGGCu -3'
miRNA:   3'- aCA--UGAUGuuCGAGG----ACGA-CGCgUCG- -5'
23599 5' -53 NC_005261.1 + 134503 0.72 0.714398
Target:  5'- cUGcACUACGAGCacagCCUGCgccUGCAGCu -3'
miRNA:   3'- -ACaUGAUGUUCGa---GGACGac-GCGUCG- -5'
23599 5' -53 NC_005261.1 + 134561 0.66 0.954139
Target:  5'- -uUGCUGgGcGGCgCCgcgGCUGCGCAGg -3'
miRNA:   3'- acAUGAUgU-UCGaGGa--CGACGCGUCg -5'
23599 5' -53 NC_005261.1 + 134880 0.66 0.961856
Target:  5'- -----cGCGGGCcCCUGCUGUGCguucggugguggAGCg -3'
miRNA:   3'- acaugaUGUUCGaGGACGACGCG------------UCG- -5'
23599 5' -53 NC_005261.1 + 135462 0.69 0.863855
Target:  5'- --cGCUGCGGGacCUCgUaCUGCGCGGCg -3'
miRNA:   3'- acaUGAUGUUC--GAGgAcGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 135675 0.66 0.958119
Target:  5'- --cGCUcgAgGAGCUCUgcGCcGCGCGGCg -3'
miRNA:   3'- acaUGA--UgUUCGAGGa-CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 136732 0.66 0.94991
Target:  5'- --cACUGCAAG-UCCcGCUGCuGCAaGCc -3'
miRNA:   3'- acaUGAUGUUCgAGGaCGACG-CGU-CG- -5'
23599 5' -53 NC_005261.1 + 137908 0.74 0.58709
Target:  5'- gGUGCUcgcgggccccGCGAGCgggCCcgGCUGCgGCGGCg -3'
miRNA:   3'- aCAUGA----------UGUUCGa--GGa-CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 137956 0.66 0.961856
Target:  5'- cGgcgGCUGCGgcggcGGCUgCggcggcgGCUGCgGCGGCg -3'
miRNA:   3'- aCa--UGAUGU-----UCGAgGa------CGACG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.