miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 104800 0.68 0.886447
Target:  5'- cGUGCUccaGCGGG-UCCcGCUcCGCAGCg -3'
miRNA:   3'- aCAUGA---UGUUCgAGGaCGAcGCGUCG- -5'
23599 5' -53 NC_005261.1 + 104663 0.68 0.886447
Target:  5'- --cGCUgGCGGGCgUgUGCUGCgGCAGCg -3'
miRNA:   3'- acaUGA-UGUUCGaGgACGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 103289 0.66 0.953727
Target:  5'- gGUGCcGCGcgcagccccgcgaAGC-CCUGCaGCgGCAGCa -3'
miRNA:   3'- aCAUGaUGU-------------UCGaGGACGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 102406 0.7 0.794183
Target:  5'- --cGCgcCAGcGCUCCUccugccGCUGCGCGGCc -3'
miRNA:   3'- acaUGauGUU-CGAGGA------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 101702 0.69 0.855861
Target:  5'- cGUGgU-CGAagcGCUCCaGCUGCGcCAGCg -3'
miRNA:   3'- aCAUgAuGUU---CGAGGaCGACGC-GUCG- -5'
23599 5' -53 NC_005261.1 + 98670 0.69 0.855861
Target:  5'- --gGCgaggGCGGGCUCCgccgggGCcggagGCGCGGCc -3'
miRNA:   3'- acaUGa---UGUUCGAGGa-----CGa----CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 98517 0.67 0.93045
Target:  5'- cGUACggGCAGGCgcgagauccggCCgguagGCUGCGCccGCg -3'
miRNA:   3'- aCAUGa-UGUUCGa----------GGa----CGACGCGu-CG- -5'
23599 5' -53 NC_005261.1 + 98177 0.68 0.893496
Target:  5'- gUGUcCUugGAGCcgCCgGggGCGCGGCg -3'
miRNA:   3'- -ACAuGAugUUCGa-GGaCgaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 97842 0.66 0.958119
Target:  5'- cGgggGCgGCGGGCgccgCCgcgGCaGCGCGGCc -3'
miRNA:   3'- aCa--UGaUGUUCGa---GGa--CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 97751 0.69 0.855861
Target:  5'- --gGCgggGCGGGCUCg-GCgGCGCGGCc -3'
miRNA:   3'- acaUGa--UGUUCGAGgaCGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 93198 0.7 0.812742
Target:  5'- uUGUACacagccuCGGGCUCCaGCaGCGcCAGCg -3'
miRNA:   3'- -ACAUGau-----GUUCGAGGaCGaCGC-GUCG- -5'
23599 5' -53 NC_005261.1 + 91334 1.13 0.00217
Target:  5'- gUGUACUACAAGCUCCUGCUGCGCAGCg -3'
miRNA:   3'- -ACAUGAUGUUCGAGGACGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 90018 0.68 0.904904
Target:  5'- -cUGCUGCGccuGGCccgggagcggggcuUCCUGCUGCcggacagccaGCGGCg -3'
miRNA:   3'- acAUGAUGU---UCG--------------AGGACGACG----------CGUCG- -5'
23599 5' -53 NC_005261.1 + 89719 0.68 0.900295
Target:  5'- aUGUACcGCAcggccguggauaAGCUCaaGCUGCcCAGCu -3'
miRNA:   3'- -ACAUGaUGU------------UCGAGgaCGACGcGUCG- -5'
23599 5' -53 NC_005261.1 + 89454 0.68 0.900295
Target:  5'- cGUGCUggaguuugacaGCGAGUUCgaGCUGCuGCuGGCc -3'
miRNA:   3'- aCAUGA-----------UGUUCGAGgaCGACG-CG-UCG- -5'
23599 5' -53 NC_005261.1 + 85975 0.7 0.78466
Target:  5'- cGUgAUUGCGcGCUCgaGCUGCGCcGCc -3'
miRNA:   3'- aCA-UGAUGUuCGAGgaCGACGCGuCG- -5'
23599 5' -53 NC_005261.1 + 84398 0.74 0.58709
Target:  5'- ---cCU-CGAGCUCCaGCUcGCGCAGCa -3'
miRNA:   3'- acauGAuGUUCGAGGaCGA-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 83134 0.66 0.958119
Target:  5'- --cGCgcgGCAcGC-CCUGCagGUGCGGCa -3'
miRNA:   3'- acaUGa--UGUuCGaGGACGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 81796 0.74 0.58709
Target:  5'- -aUAUUGcCAAGCgagCC-GCUGCGCGGCg -3'
miRNA:   3'- acAUGAU-GUUCGa--GGaCGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 80175 0.66 0.940695
Target:  5'- cGUGCcguucgagcgUGCcAGCUCCUGCagGUaCAGCu -3'
miRNA:   3'- aCAUG----------AUGuUCGAGGACGa-CGcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.