Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 5' | -53 | NC_005261.1 | + | 53982 | 0.76 | 0.474141 |
Target: 5'- --aGCgcgGCGAGCUCCaGC-GCGCGGCg -3' miRNA: 3'- acaUGa--UGUUCGAGGaCGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 52976 | 0.66 | 0.94543 |
Target: 5'- gGUGCggcgccgGCAGGCgggggcggcgCCcagGCgucgGCGCAGCu -3' miRNA: 3'- aCAUGa------UGUUCGa---------GGa--CGa---CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 51902 | 0.66 | 0.94543 |
Target: 5'- --cGCUACAucGC-CCggGC-GCGCAGCg -3' miRNA: 3'- acaUGAUGUu-CGaGGa-CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 51812 | 0.69 | 0.874663 |
Target: 5'- cGUGCUGCGGcugguGCgcgCCUGCcUGCaccaccggcgcaaggGCAGCg -3' miRNA: 3'- aCAUGAUGUU-----CGa--GGACG-ACG---------------CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 49577 | 0.67 | 0.93045 |
Target: 5'- cGUGaacACGGGCUCgggGC-GCGCGGCg -3' miRNA: 3'- aCAUga-UGUUCGAGga-CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 48789 | 0.66 | 0.940695 |
Target: 5'- --gGCgaucGCcGGCUCCgugagGCcgUGCGCGGCg -3' miRNA: 3'- acaUGa---UGuUCGAGGa----CG--ACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 48503 | 0.66 | 0.940695 |
Target: 5'- cGUGCUugcGCAGGUUCUUGaC-GCGCGcGCc -3' miRNA: 3'- aCAUGA---UGUUCGAGGAC-GaCGCGU-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 48388 | 0.66 | 0.954139 |
Target: 5'- cUGUACUugGGGCUCgCgaaGC-GCGCcuuguGGCu -3' miRNA: 3'- -ACAUGAugUUCGAG-Ga--CGaCGCG-----UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 46455 | 0.68 | 0.906841 |
Target: 5'- cGUGCgugaACAGGC-CCUcgaaGCgcagGUGCAGCu -3' miRNA: 3'- aCAUGa---UGUUCGaGGA----CGa---CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 45536 | 0.69 | 0.845141 |
Target: 5'- cGUGCUgccGCAcuacgcuguugcccGGCUgCUGCUG-GCGGCc -3' miRNA: 3'- aCAUGA---UGU--------------UCGAgGACGACgCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 44734 | 0.66 | 0.94543 |
Target: 5'- --cGCUGCAgcugGGCcCCgaGCUGCGC-GCg -3' miRNA: 3'- acaUGAUGU----UCGaGGa-CGACGCGuCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 44209 | 0.67 | 0.93045 |
Target: 5'- --aGCUGCAGGCggCCcgGgaGCGCGcGCu -3' miRNA: 3'- acaUGAUGUUCGa-GGa-CgaCGCGU-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 44022 | 0.66 | 0.958119 |
Target: 5'- --gGCgcgGCGGGCggCC-GCcGCGCGGCg -3' miRNA: 3'- acaUGa--UGUUCGa-GGaCGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 43693 | 0.66 | 0.94543 |
Target: 5'- --cACgGCGAGgUCCUggccugccacgcGCUGCGCgAGCa -3' miRNA: 3'- acaUGaUGUUCgAGGA------------CGACGCG-UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 43629 | 0.7 | 0.78466 |
Target: 5'- cGUGCUGUggGCgCCcGUgugGCGCGGCg -3' miRNA: 3'- aCAUGAUGuuCGaGGaCGa--CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 43473 | 0.68 | 0.902944 |
Target: 5'- gGUGCUggcggaguGCGAGgccuucgcggcggacCUCCUgcGCUGCGcCAGCg -3' miRNA: 3'- aCAUGA--------UGUUC---------------GAGGA--CGACGC-GUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 42378 | 0.68 | 0.906841 |
Target: 5'- cGUACUgguGCcGGC-CCaGCUGCGCcuGCa -3' miRNA: 3'- aCAUGA---UGuUCGaGGaCGACGCGu-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 42226 | 0.75 | 0.514154 |
Target: 5'- --cGCcGCGAGCUCCgccGC-GCGCAGCg -3' miRNA: 3'- acaUGaUGUUCGAGGa--CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 39074 | 0.66 | 0.958119 |
Target: 5'- aGUACUACAcccGCUCCU-CgGacgGCGGCa -3' miRNA: 3'- aCAUGAUGUu--CGAGGAcGaCg--CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 38985 | 0.69 | 0.847647 |
Target: 5'- ---cCUGCAGauGUUUCUGCUGUGcCAGCg -3' miRNA: 3'- acauGAUGUU--CGAGGACGACGC-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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