Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 5' | -53 | NC_005261.1 | + | 20549 | 0.67 | 0.935702 |
Target: 5'- -cUGCUGgAcguGGCggCggGCUGCGCAGCg -3' miRNA: 3'- acAUGAUgU---UCGa-GgaCGACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 129708 | 0.67 | 0.93045 |
Target: 5'- gGgcCggagGCAGGC-CCgccgGCUGCaGCGGCa -3' miRNA: 3'- aCauGa---UGUUCGaGGa---CGACG-CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 98517 | 0.67 | 0.93045 |
Target: 5'- cGUACggGCAGGCgcgagauccggCCgguagGCUGCGCccGCg -3' miRNA: 3'- aCAUGa-UGUUCGa----------GGa----CGACGCGu-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 72517 | 0.67 | 0.93045 |
Target: 5'- --cGCcGCAucCUCCUuggcggcucGCUGCGCGGCa -3' miRNA: 3'- acaUGaUGUucGAGGA---------CGACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 49577 | 0.67 | 0.93045 |
Target: 5'- cGUGaacACGGGCUCgggGC-GCGCGGCg -3' miRNA: 3'- aCAUga-UGUUCGAGga-CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 44209 | 0.67 | 0.93045 |
Target: 5'- --aGCUGCAGGCggCCcgGgaGCGCGcGCu -3' miRNA: 3'- acaUGAUGUUCGa-GGa-CgaCGCGU-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 134168 | 0.67 | 0.92991 |
Target: 5'- --gGCUGCu-GCUCCcgcUGCUugcggagggccugGCGCGGCu -3' miRNA: 3'- acaUGAUGuuCGAGG---ACGA-------------CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 48789 | 0.66 | 0.940695 |
Target: 5'- --gGCgaucGCcGGCUCCgugagGCcgUGCGCGGCg -3' miRNA: 3'- acaUGa---UGuUCGAGGa----CG--ACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 121460 | 0.66 | 0.940695 |
Target: 5'- cGU-CgaugGCGAGCUCCUcggcguaccgGCUGCcgccacgggGCGGCg -3' miRNA: 3'- aCAuGa---UGUUCGAGGA----------CGACG---------CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 121523 | 0.66 | 0.940695 |
Target: 5'- cGU-CgaugGCGAGCUCCUcgucGCUGuCGgAGCc -3' miRNA: 3'- aCAuGa---UGUUCGAGGA----CGAC-GCgUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 69778 | 0.66 | 0.94991 |
Target: 5'- cGgggACUGagccGCUCCcGCggcGCGCGGCg -3' miRNA: 3'- aCa--UGAUguu-CGAGGaCGa--CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 15667 | 0.66 | 0.94991 |
Target: 5'- gGUGCUcCAGGaagaucagCCUGCccCGCAGCg -3' miRNA: 3'- aCAUGAuGUUCga------GGACGacGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 51902 | 0.66 | 0.94543 |
Target: 5'- --cGCUACAucGC-CCggGC-GCGCAGCg -3' miRNA: 3'- acaUGAUGUu-CGaGGa-CGaCGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 134341 | 0.66 | 0.94543 |
Target: 5'- cUGUACcGCAAGCcCCcGCgccgccGCGCGGg -3' miRNA: 3'- -ACAUGaUGUUCGaGGaCGa-----CGCGUCg -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 132329 | 0.66 | 0.94543 |
Target: 5'- -----cGCGGGgaCCUGCacggggccaUGCGCAGCu -3' miRNA: 3'- acaugaUGUUCgaGGACG---------ACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 73770 | 0.66 | 0.94543 |
Target: 5'- ---uCUACgAGGCgcuggCCUGCgacgugcGCGCGGCg -3' miRNA: 3'- acauGAUG-UUCGa----GGACGa------CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 52976 | 0.66 | 0.94543 |
Target: 5'- gGUGCggcgccgGCAGGCgggggcggcgCCcagGCgucgGCGCAGCu -3' miRNA: 3'- aCAUGa------UGUUCGa---------GGa--CGa---CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 44734 | 0.66 | 0.94543 |
Target: 5'- --cGCUGCAgcugGGCcCCgaGCUGCGC-GCg -3' miRNA: 3'- acaUGAUGU----UCGaGGa-CGACGCGuCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 43693 | 0.66 | 0.94543 |
Target: 5'- --cACgGCGAGgUCCUggccugccacgcGCUGCGCgAGCa -3' miRNA: 3'- acaUGaUGUUCgAGGA------------CGACGCG-UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 133788 | 0.66 | 0.94262 |
Target: 5'- cGUGCggcGCAucccgcccgGGCUgCUcgacggcgacgaggcGCUGCGCGGCc -3' miRNA: 3'- aCAUGa--UGU---------UCGAgGA---------------CGACGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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