miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 56275 0.67 0.913132
Target:  5'- gGUACUGCGAGCUggcgCC-GCUGUucGCcGCc -3'
miRNA:   3'- aCAUGAUGUUCGA----GGaCGACG--CGuCG- -5'
23599 5' -53 NC_005261.1 + 30101 0.67 0.913132
Target:  5'- cGUGCUcCGGGCagcugagCUGCUugGCGCGGCc -3'
miRNA:   3'- aCAUGAuGUUCGag-----GACGA--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 122575 0.68 0.906841
Target:  5'- --cGCUGCGcAGCUCC-GCcGCaGCGGCc -3'
miRNA:   3'- acaUGAUGU-UCGAGGaCGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 72517 0.67 0.93045
Target:  5'- --cGCcGCAucCUCCUuggcggcucGCUGCGCGGCa -3'
miRNA:   3'- acaUGaUGUucGAGGA---------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 98517 0.67 0.93045
Target:  5'- cGUACggGCAGGCgcgagauccggCCgguagGCUGCGCccGCg -3'
miRNA:   3'- aCAUGa-UGUUCGa----------GGa----CGACGCGu-CG- -5'
23599 5' -53 NC_005261.1 + 129708 0.67 0.93045
Target:  5'- gGgcCggagGCAGGC-CCgccgGCUGCaGCGGCa -3'
miRNA:   3'- aCauGa---UGUUCGaGGa---CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 73770 0.66 0.94543
Target:  5'- ---uCUACgAGGCgcuggCCUGCgacgugcGCGCGGCg -3'
miRNA:   3'- acauGAUG-UUCGa----GGACGa------CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 52976 0.66 0.94543
Target:  5'- gGUGCggcgccgGCAGGCgggggcggcgCCcagGCgucgGCGCAGCu -3'
miRNA:   3'- aCAUGa------UGUUCGa---------GGa--CGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 44734 0.66 0.94543
Target:  5'- --cGCUGCAgcugGGCcCCgaGCUGCGC-GCg -3'
miRNA:   3'- acaUGAUGU----UCGaGGa-CGACGCGuCG- -5'
23599 5' -53 NC_005261.1 + 43693 0.66 0.94543
Target:  5'- --cACgGCGAGgUCCUggccugccacgcGCUGCGCgAGCa -3'
miRNA:   3'- acaUGaUGUUCgAGGA------------CGACGCG-UCG- -5'
23599 5' -53 NC_005261.1 + 133788 0.66 0.94262
Target:  5'- cGUGCggcGCAucccgcccgGGCUgCUcgacggcgacgaggcGCUGCGCGGCc -3'
miRNA:   3'- aCAUGa--UGU---------UCGAgGA---------------CGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 121523 0.66 0.940695
Target:  5'- cGU-CgaugGCGAGCUCCUcgucGCUGuCGgAGCc -3'
miRNA:   3'- aCAuGa---UGUUCGAGGA----CGAC-GCgUCG- -5'
23599 5' -53 NC_005261.1 + 121460 0.66 0.940695
Target:  5'- cGU-CgaugGCGAGCUCCUcggcguaccgGCUGCcgccacgggGCGGCg -3'
miRNA:   3'- aCAuGa---UGUUCGAGGA----------CGACG---------CGUCG- -5'
23599 5' -53 NC_005261.1 + 48789 0.66 0.940695
Target:  5'- --gGCgaucGCcGGCUCCgugagGCcgUGCGCGGCg -3'
miRNA:   3'- acaUGa---UGuUCGAGGa----CG--ACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 133369 0.66 0.940695
Target:  5'- --gGCUuc-GGCUgCCUGC-GCGCGGCc -3'
miRNA:   3'- acaUGAuguUCGA-GGACGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 80175 0.66 0.940695
Target:  5'- cGUGCcguucgagcgUGCcAGCUCCUGCagGUaCAGCu -3'
miRNA:   3'- aCAUG----------AUGuUCGAGGACGa-CGcGUCG- -5'
23599 5' -53 NC_005261.1 + 48503 0.66 0.940695
Target:  5'- cGUGCUugcGCAGGUUCUUGaC-GCGCGcGCc -3'
miRNA:   3'- aCAUGA---UGUUCGAGGAC-GaCGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 20549 0.67 0.935702
Target:  5'- -cUGCUGgAcguGGCggCggGCUGCGCAGCg -3'
miRNA:   3'- acAUGAUgU---UCGa-GgaCGACGCGUCG- -5'
23599 5' -53 NC_005261.1 + 62124 0.68 0.906841
Target:  5'- cGUcCUGCAGGC-CCUGCgucaGCAGg -3'
miRNA:   3'- aCAuGAUGUUCGaGGACGacg-CGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.